Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

snpEff report bug #106

Closed
egenomics opened this issue Jan 30, 2020 · 1 comment
Closed

snpEff report bug #106

egenomics opened this issue Jan 30, 2020 · 1 comment
Assignees
@maxulysse
Labels
bug Something isn't working

Comments

@egenomics
Copy link

Hi, I found a small bug.

In the report generated by snpEff at the end of it there is a link to ~/results/Reports/SAMPLE/snpEff/Strelka_SAMPLE_variants_snpEff.genes.txt

however, the txt file in this directory is named ~/results/Reports/SAMPLE/snpEff/Strelka_SAMPLE_variants_snpEff.txt

(without the genes part, therefore the link doesn't work)
@maxulysse
Copy link
Member

Oooh, good catch, I'll take care of it, thanks for noticing that.

@maxulysse maxulysse self-assigned this Jan 30, 2020
@maxulysse maxulysse added the bug Something isn't working label Jan 30, 2020
maxulysse added a commit to maxulysse/nf-core_sarek that referenced this issue Feb 3, 2020
@maxulysse
fix nf-core#106
fc114bd
@maxulysse maxulysse mentioned this issue Feb 3, 2020
Merged
8 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@maxulysse maxulysse

Labels
bug Something isn't working
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@maxulysse @egenomics