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Replace the locale module add_info_to_vcf with bcftools #885

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asp8200 opened this issue Dec 7, 2022 · 0 comments
Open

Replace the locale module add_info_to_vcf with bcftools #885

asp8200 opened this issue Dec 7, 2022 · 0 comments
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enhancement New feature or request

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@asp8200
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asp8200 commented Dec 7, 2022

Description of feature

If possible, use bcftools for adding the INFO-field SOURCE to germline-vcf-files instead of the local module add_info_to_vcf.

https://nfcore.slack.com/archives/C02MDBZAYJK/p1670415397942539

https://samtools.github.io/bcftools/howtos/plugin.fill-tags.html
@asp8200 asp8200 added the enhancement New feature or request label Dec 7, 2022
@asp8200 asp8200 self-assigned this Dec 7, 2022
@asp8200 asp8200 mentioned this issue Jun 1, 2023
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@asp8200 asp8200 removed their assignment Jun 1, 2023
@asp8200 asp8200 mentioned this issue May 15, 2024
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@maxulysse maxulysse added this to the 3.5 milestone May 15, 2024
@FriederikeHanssen FriederikeHanssen removed this from the 3.5 milestone Aug 19, 2024
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enhancement New feature or request
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Hackathon: May 2024
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@maxulysse @FriederikeHanssen @asp8200