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FIX: patch more modules #1082

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merged 6 commits into from Jun 7, 2023
Merged

FIX: patch more modules #1082

merged 6 commits into from Jun 7, 2023

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maxulysse
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all aboard quay.io

@maxulysse maxulysse mentioned this pull request Jun 7, 2023
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@maxulysse
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merge conflicts are solved, but github is down

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github-actions bot commented Jun 7, 2023 •
edited

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 63220d2

+| ✅ 152 tests passed       |+
#| ❔   9 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2023-06-07 20:03:36

FriederikeHanssen
FriederikeHanssen approved these changes Jun 7, 2023
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Sorry still not quite gotten the container path logic, but docker hub will be detected even though we set quay as default?

modules/nf-core/gatk4/baserecalibratorspark/main.nf Show resolved Hide resolved
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Sorry still not quite gotten the container path logic, but docker hub will be detected even though we set quay as default?

No, no the full URI for docker works, but if we mirror docker.io containers on quay.io, then with all containers on the same registry, it's easier to change for all

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FriederikeHanssen commented Jun 7, 2023 •
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Thanks, yeah afterwards I saw Harshil's pr about moving all containers to quay. Makes all perfect sense now

@maxulysse maxulysse mentioned this pull request Jun 7, 2023
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@maxulysse maxulysse merged commit 5da0b66 into nf-core:dev Jun 7, 2023
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@maxulysse maxulysse deleted the patch_more_modules branch February 19, 2024 14:42
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