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fix getpileupsummary should not run if no germline resource is provided #1171

Merged
merged 11 commits into from
Aug 17, 2023
Merged

fix getpileupsummary should not run if no germline resource is provided #1171

merged 11 commits into from
Aug 17, 2023

Commits on Aug 4, 2023

  1. fix getpileupsummary should not run if no germline resource is provided

    @FriederikeHanssen
    FriederikeHanssen committed Aug 4, 2023
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  2. update changelog

    @FriederikeHanssen
    FriederikeHanssen committed Aug 4, 2023
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  3. move joint_mutect2 tests to regular mutect2 tests

    @FriederikeHanssen
    FriederikeHanssen committed Aug 4, 2023
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  4. Merge branch 'dev' into germline_resource

    @FriederikeHanssen
    FriederikeHanssen committed Aug 4, 2023
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  5. simplify mutect test conf

    @FriederikeHanssen
    FriederikeHanssen committed Aug 4, 2023
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Commits on Aug 5, 2023

  1. move long running test back to manual

    @FriederikeHanssen
    FriederikeHanssen committed Aug 5, 2023
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  2. fix md5sums for csv files

    @FriederikeHanssen
    FriederikeHanssen committed Aug 5, 2023
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  3. move joint tests back to manual

    @FriederikeHanssen
    FriederikeHanssen committed Aug 5, 2023
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Commits on Aug 8, 2023

  1. Merge branch 'dev' into germline_resource

    @FriederikeHanssen
    FriederikeHanssen committed Aug 8, 2023
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Commits on Aug 16, 2023

  1. Update workflows/sarek.nf 

    Co-authored-by: Maxime U Garcia <maxime.garcia@scilifelab.se>
    @FriederikeHanssen @maxulysse
    FriederikeHanssen and maxulysse committed Aug 16, 2023
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  2. Merge branch 'dev' into germline_resource

    @FriederikeHanssen
    FriederikeHanssen committed Aug 16, 2023
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