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Update modules #1180

Merged
merged 21 commits into from
Aug 17, 2023
Merged

Update modules #1180

merged 21 commits into from
Aug 17, 2023

Commits on Aug 15, 2023

  1. Update modules

    @asp8200
    asp8200 committed Aug 15, 2023
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  2. Add required input channels for bcftools_stats

    @asp8200
    asp8200 committed Aug 15, 2023
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  3. Trying to fix call to SENTIEON_BWAMEM

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    asp8200 committed Aug 15, 2023
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  4. Trying to fix call to SENTIEON_BWAMEM

    @asp8200
    asp8200 committed Aug 15, 2023
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  5. Trying to input-channels for BCFTOOLS_STATS right

    @asp8200
    asp8200 committed Aug 15, 2023
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  6. Fix input-channels for SENTIEON_DEDUP

    @asp8200
    asp8200 committed Aug 15, 2023
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  7. Trying to fix input-channels for SNPEFF_SNPEFF

    @asp8200
    asp8200 committed Aug 15, 2023
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  8. Trying to handle Missing process or function map related to VCF_ANNOT… 

    …ATE_SNPEFF
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    asp8200 committed Aug 15, 2023
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Commits on Aug 16, 2023

  1. Trying to get call to SNPEFF to work

    @asp8200
    asp8200 committed Aug 16, 2023
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  2. Still trying to get call to SNPEFF working

    @asp8200
    asp8200 committed Aug 16, 2023
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  3. Fixing definition of snpeff_cache when downloading snpeff-cache

    @asp8200
    asp8200 committed Aug 16, 2023
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  4. Trying to revert controlfreec/makegraph to previous version. (Handlin… 

    …g of ploidy in controlfreec will be part of upcoming release.)
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    asp8200 committed Aug 16, 2023
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  5. Trying to revert controlfreec/makegraph to previous version. (2)

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    asp8200 committed Aug 16, 2023
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  6. Updating md5sums since cnvkit was updated. [skip ci] [skip actions]

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    asp8200 committed Aug 16, 2023
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  7. Replacing MSISENSORPRO_MSI_SOMATIC with SISENSORPRO_MSISOMATIC

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    asp8200 committed Aug 16, 2023
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  8. Replacing MSISENSORPRO_MSI_SOMATIC with SISENSORPRO_MSISOMATIC. (2)

    @asp8200
    asp8200 committed Aug 16, 2023
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  9. Updating changelog

    @asp8200
    asp8200 committed Aug 16, 2023
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Commits on Aug 17, 2023

  1. Update modules.json 

    Co-authored-by: Friederike Hanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
    @asp8200 @FriederikeHanssen
    asp8200 and FriederikeHanssen committed Aug 17, 2023
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  2. Update CHANGELOG.md 

    Co-authored-by: Friederike Hanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
    @asp8200 @FriederikeHanssen
    asp8200 and FriederikeHanssen committed Aug 17, 2023
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  3. Update CHANGELOG.md 

    Co-authored-by: Friederike Hanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
    @asp8200 @FriederikeHanssen
    asp8200 and FriederikeHanssen committed Aug 17, 2023
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  4. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Aug 17, 2023
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