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prepare release 3.1.1 #858

Merged
merged 4 commits into from Nov 21, 2022
Merged

prepare release 3.1.1 #858

merged 4 commits into from Nov 21, 2022

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maxulysse
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Nov 21, 2022 •
edited

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f62041a

+| ✅ 150 tests passed       |+
#| ❔   8 tests were ignored |#
!| ❗   3 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: '3.1.1'
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
  • schema_description - No description provided in schema for parameter: cnvkit_reference

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.6
  • Run at 2022-11-21 12:22:59

@maxulysse
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I need to add more stuff, do not merge yet please

@maxulysse maxulysse merged commit 578aacf into nf-core:dev Nov 21, 2022
@maxulysse maxulysse deleted the dev_3.1.1 branch November 21, 2022 12:24
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@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

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@maxulysse @FriederikeHanssen