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Remote test warning from nf-core lint #894

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merged 5 commits into from Dec 12, 2022
Merged

Remote test warning from nf-core lint #894

merged 5 commits into from Dec 12, 2022

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maxulysse
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Dec 12, 2022 •
edited

nf-core lint overall result: Passed ✅

Posted for pipeline commit 4ac0b43

+| ✅ 151 tests passed       |+
#| ❔   8 tests were ignored |#

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.1
  • Run at 2022-12-12 16:14:27

JoseEspinosa
JoseEspinosa approved these changes Dec 12, 2022
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LGTM, just a small question 🚀

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@maxulysse maxulysse merged commit e48ce04 into nf-core:dev Dec 12, 2022
FriederikeHanssen
FriederikeHanssen reviewed Dec 13, 2022
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assets/methods_description_template.yml
@@ -3,8 +3,6 @@ description: "Suggested text and references to use when describing pipeline usag
section_name: "nf-core/sarek Methods Description"
section_href: "https://github.com/nf-core/sarek"
plot_type: "html"
## TODO nf-core: Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
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shouldn't we add some description on sarek here?

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I looked at the other pipelines, and nothing is there, the only difference I saw in some pipelines was the comments removed.
I'm not sure why it's in the TEMPLATE

@maxulysse maxulysse deleted the remove_test_warnings branch December 16, 2022 11:13
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@FriederikeHanssen FriederikeHanssen FriederikeHanssen left review comments

@JoseEspinosa JoseEspinosa JoseEspinosa approved these changes

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3 participants
@maxulysse @JoseEspinosa @FriederikeHanssen