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DSL2 version with working alevin workflow #55

Merged
merged 27 commits into from Apr 19, 2021
Merged

DSL2 version with working alevin workflow #55

merged 27 commits into from Apr 19, 2021

Commits on Feb 18, 2021

  1. init dsl2 branch with cellranger modules and subworkflow

    @alexthiery1
    alexthiery1 committed Feb 18, 2021
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Commits on Mar 16, 2021

  1. add test data for cellranger subworkflow

    @alexthiery1
    alexthiery1 committed Mar 16, 2021
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  2. add config for module params and workflow testing

    @alexthiery1
    alexthiery1 committed Mar 16, 2021
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  3. init cellranger subworkflow tests

    @alexthiery1
    alexthiery1 committed Mar 16, 2021
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  4. edit fastq input into cellranger count

    @alexthiery1
    alexthiery1 committed Mar 16, 2021
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  5. init csv metadata module

    @alexthiery1
    alexthiery1 committed Mar 16, 2021
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Commits on Mar 19, 2021

  1. add versions and emit statements to modules

    @alexthiery1
    alexthiery1 committed Mar 19, 2021
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Commits on Apr 14, 2021

  1. initial refactoring

    @KevinMenden
    KevinMenden committed Apr 14, 2021
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  2. initial refactoring

    @KevinMenden
    KevinMenden committed Apr 14, 2021
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  3. started adding modules and building pipeline

    @KevinMenden
    KevinMenden committed Apr 14, 2021
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  4. added more modules

    @KevinMenden
    KevinMenden committed Apr 14, 2021
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  5. move star to local modules

    @KevinMenden
    KevinMenden committed Apr 14, 2021
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Commits on Apr 15, 2021

  1. refactored into different workflows

    @KevinMenden
    KevinMenden committed Apr 15, 2021
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  2. Merge remote-tracking branch 'origin/dev' into feat-dsl2

    @KevinMenden
    KevinMenden committed Apr 15, 2021
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  3. Merge pull request #1 from KevinMenden/feat-dsl2 

    Feat dsl2
    @KevinMenden
    KevinMenden committed Apr 15, 2021
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  4. added local alevin modules

    @KevinMenden
    KevinMenden committed Apr 15, 2021
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  5. half-working alevin dsl2 version

    @KevinMenden
    KevinMenden committed Apr 15, 2021
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Commits on Apr 16, 2021

  1. more updates

    @KevinMenden
    KevinMenden committed Apr 16, 2021
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Commits on Apr 19, 2021

  1. added multiqc, get software versions

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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  2. added workflow groovy class

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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  3. working alevin version

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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  4. removed 'type' parameter

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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  5. added whitelist to salmon_alevin

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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  6. added completion and utils classes

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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  7. updated schema; started with star

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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  8. working STARsolo pipeline

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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  9. added multiqc to starsolo; fixed bug

    @KevinMenden
    KevinMenden committed Apr 19, 2021
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