Merge pull request #2140 from nf-core/explicitly-disable-conda-contai…

…ner-profiles Explicitly disable conda container profiles
nf-core · Dec 23, 2022 · 69060a8 · 69060a8
2 parents 39c6bcd + a09c060
commit 69060a8
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -18,6 +18,7 @@
 
 - Fix the syntax of github_output in GitHub actions ([#2114](https://github.com/nf-core/tools/pull/2114))
 - Fix a bug introduced in 2.7 that made pipelines hang ([#2132](https://github.com/nf-core/tools/issues/2132))
+- Explicitly disable `conda` when a container profile ([#2140](https://github.com/nf-core/tools/pull/2140))
 
 ### Linting
 

diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config
@@ -102,6 +102,7 @@ profiles {
     docker {
         docker.enabled         = true
         docker.userEmulation   = true
+        conda.enabled          = false
         singularity.enabled    = false
         podman.enabled         = false
         shifter.enabled        = false
@@ -113,27 +114,31 @@ profiles {
     singularity {
         singularity.enabled    = true
         singularity.autoMounts = true
+        conda.enabled          = false
         docker.enabled         = false
         podman.enabled         = false
         shifter.enabled        = false
         charliecloud.enabled   = false
     }
     podman {
         podman.enabled         = true
+        conda.enabled          = false
         docker.enabled         = false
         singularity.enabled    = false
         shifter.enabled        = false
         charliecloud.enabled   = false
     }
     shifter {
         shifter.enabled        = true
+        conda.enabled          = false
         docker.enabled         = false
         singularity.enabled    = false
         podman.enabled         = false
         charliecloud.enabled   = false
     }
     charliecloud {
         charliecloud.enabled   = true
+        conda.enabled          = false
         docker.enabled         = false
         singularity.enabled    = false
         podman.enabled         = false