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Textual create #2404

Merged
merged 129 commits into from
May 14, 2024
Merged

Textual create #2404

merged 129 commits into from
May 14, 2024

Commits on Aug 20, 2023

  1. WIP: First stab at writing some Textual

    @ewels
    ewels committed Aug 20, 2023
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Commits on Aug 21, 2023

  1. Refactor: Break into multiple files

    @ewels
    ewels committed Aug 21, 2023
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  2. Remove unusued imports

    @ewels
    ewels committed Aug 21, 2023
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Commits on Aug 22, 2023

  1. show error message when pressing enter

    @mirpedrol
    mirpedrol committed Aug 22, 2023
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  2. show failure messages when button is pressed

    @mirpedrol
    mirpedrol committed Aug 22, 2023
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  3. add usegenomicdata screen (TODO on_button_pressed)

    @mirpedrol
    mirpedrol committed Aug 22, 2023
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Commits on Aug 23, 2023

  1. add custom pipeline switch table to select pipeline features

    @mirpedrol
    mirpedrol committed Aug 23, 2023
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Commits on Aug 24, 2023

  1. create new widget PipelineFeature to display feature buttons and help… 

    … text
    @mirpedrol
    mirpedrol committed Aug 24, 2023
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  2. add more custom features

    @mirpedrol
    mirpedrol committed Aug 24, 2023
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Commits on Aug 25, 2023

  1. add template features to skip to TEMPLATE_CONFIG

    @mirpedrol
    mirpedrol committed Aug 25, 2023
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Commits on Aug 28, 2023

  1. animate help box

    @mirpedrol
    mirpedrol committed Aug 28, 2023
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Commits on Aug 29, 2023

  1. add type_nfcore screen and use PipelineCreate to create a pipeline

    @mirpedrol
    mirpedrol committed Aug 29, 2023
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Commits on Aug 30, 2023

  1. modify PipelineCreate to accept a template dictionary

    @mirpedrol
    mirpedrol committed Aug 30, 2023
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  2. start modifying nf-core create command to use TUI and not CLI

    @mirpedrol
    mirpedrol committed Aug 30, 2023
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Commits on Aug 31, 2023

  1. small bug fixes and add a deprecation message for nf-core create command

    @mirpedrol
    mirpedrol committed Aug 31, 2023
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  2. create command fails if one but not all arguments are provided

    @mirpedrol
    mirpedrol committed Aug 31, 2023
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  3. ask if launching TUI when using deprecated nf-core create command

    @mirpedrol
    mirpedrol committed Aug 31, 2023
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  4. add final_details screen for version and force

    @mirpedrol
    mirpedrol committed Aug 31, 2023
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  5. add nfcorepipeline grid with features to select

    @mirpedrol
    mirpedrol committed Aug 31, 2023
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  6. first ask if the pipeline will be nf-core or custom before basicdetails

    @mirpedrol
    mirpedrol committed Aug 31, 2023
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  7. use kwargs

    @mirpedrol
    mirpedrol committed Aug 31, 2023
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Commits on Sep 1, 2023

  1. remove inexisten variable version from send-tweet github workflow

    @mirpedrol
    mirpedrol committed Sep 1, 2023
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  2. fix typo in gh_badges jinja variable to github_badges

    @mirpedrol
    mirpedrol committed Sep 1, 2023
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  3. bump version of nf-test snap files

    @mirpedrol
    mirpedrol committed Sep 1, 2023
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  4. update changelog

    @mirpedrol
    mirpedrol committed Sep 1, 2023
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  5. add outdir textinput and update config

    @mirpedrol
    mirpedrol committed Sep 1, 2023
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  6. refactor jinja template 'branded' to 'is_nfcore'

    @mirpedrol
    mirpedrol committed Sep 1, 2023
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  7. refactor params_dict to jinja_params and use that instead of the config

    @mirpedrol
    mirpedrol committed Sep 1, 2023
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  8. refactor function obtain_jinja_params_dict

    @mirpedrol
    mirpedrol committed Sep 1, 2023
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  9. run create command from the App, mv nf_core/create.py to nf_core/pipe… 

    …lines/create/create.py
    @mirpedrol
    mirpedrol committed Sep 1, 2023
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Commits on Oct 3, 2023

  1. add new screen to create a github repo and push the new pipeline (not… 

    … working from the app)
    @mirpedrol
    mirpedrol committed Oct 3, 2023
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Commits on Nov 2, 2023

  1. Some minor CSS tweaks

    @ewels
    ewels committed Nov 2, 2023
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Commits on Nov 3, 2023

  1. Add logging handler and final screen to visualise logs

    @mirpedrol
    mirpedrol committed Nov 3, 2023
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  2. fix githubrepo buttons handled by the same function

    @mirpedrol
    mirpedrol committed Nov 3, 2023
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Commits on Nov 6, 2023

  1. fix pytests

    @mirpedrol
    mirpedrol committed Nov 6, 2023
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  2. Merge branch 'dev' of https://github.com/nf-core/tools into textual-c… 

    …reate
    @mirpedrol
    mirpedrol committed Nov 6, 2023
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  3. fix test_remove_patch

    @mirpedrol
    mirpedrol committed Nov 6, 2023
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  4. add types-requests to requirements-dev

    @mirpedrol
    mirpedrol committed Nov 6, 2023
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Commits on Nov 10, 2023

  1. add full logging screen to show logging messages

    @mirpedrol
    mirpedrol committed Nov 10, 2023
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Commits on Nov 13, 2023

  1. autopopulate github credentials and hide password

    @mirpedrol
    mirpedrol committed Nov 13, 2023
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  2. add button to show or hide password

    @mirpedrol
    mirpedrol committed Nov 13, 2023
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Commits on Nov 14, 2023

  1. update textual and textual-dev versions

    @mirpedrol
    mirpedrol committed Nov 14, 2023
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  2. add first snapshot tests

    @mirpedrol
    mirpedrol committed Nov 14, 2023
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Commits on Dec 5, 2023

  1. add snapshots for all screens

    @mirpedrol
    mirpedrol committed Dec 5, 2023
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  2. Merge branch 'dev' of https://github.com/nf-core/tools into textual-c… 

    …reate
    @mirpedrol
    mirpedrol committed Dec 5, 2023
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Commits on Jan 5, 2024

  1. Merge branch 'dev' of https://github.com/nf-core/tools into textual-c… 

    …reate
    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  2. ruff code modifications

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  3. update snapshots

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  4. ask if we have to create a github repo in a different screen

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  5. add snapshot for github repo question and exit message

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  6. add work threads for creating a pipeline and a github repo

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  7. add loading screen when creating a pipeline

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  8. show logging only at the end

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  9. add loading screen for repo creation

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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  10. update app snapshots

    @mirpedrol
    mirpedrol committed Jan 5, 2024
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Commits on Jan 8, 2024

  1. fix typing error

    @mirpedrol
    mirpedrol committed Jan 8, 2024
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  2. ignroe snapshot files with editorconfig

    @mirpedrol
    mirpedrol committed Jan 8, 2024
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  3. add exclusive=True to work threads

    @mirpedrol
    mirpedrol committed Jan 8, 2024
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  4. remove logging and add completed screen instead

    @mirpedrol
    mirpedrol committed Jan 8, 2024
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  5. Merge branch 'dev' of https://github.com/nf-core/tools into textual-c… 

    …reate
    @mirpedrol
    mirpedrol committed Jan 8, 2024
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  6. show an error message if the pipeline already exists

    @mirpedrol
    mirpedrol committed Jan 8, 2024
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  7. fix nf-core.pipelines.create import

    @mirpedrol
    mirpedrol committed Jan 8, 2024
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  8. GHA use new nf-core pipelines create command and fixed default org

    @mirpedrol
    mirpedrol committed Jan 8, 2024
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  9. fix pytests

    @mirpedrol
    mirpedrol committed Jan 8, 2024
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Commits on Jan 9, 2024

  1. add loading messages

    @mirpedrol
    mirpedrol committed Jan 9, 2024
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  2. default version to 1.0.0dev

    @mirpedrol
    mirpedrol committed Jan 9, 2024
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Commits on Jan 19, 2024

  1. add logging instead of loading screen and see logging messages on rea… 

    …l time
    @mirpedrol
    mirpedrol committed Jan 19, 2024
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Commits on Feb 19, 2024

  1. deprecation error if 'nf-core create' is used

    @mirpedrol
    mirpedrol committed Feb 19, 2024
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  2. more formatting and docs

    @mirpedrol
    mirpedrol committed Feb 19, 2024
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  3. add button to go back

    @mirpedrol
    mirpedrol committed Feb 19, 2024
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Commits on Feb 20, 2024

  1. disable button to close logs while pipeline is not created

    @mirpedrol
    mirpedrol committed Feb 20, 2024
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  2. more tweaking of logging buttons and screen

    @mirpedrol
    mirpedrol committed Feb 20, 2024
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Commits on Feb 21, 2024

  1. Merge branch 'dev' of https://github.com/nf-core/tools into textual-c… 

    …reate
    @mirpedrol
    mirpedrol committed Feb 21, 2024
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  2. update create app tests according to last changes

    @mirpedrol
    mirpedrol committed Feb 21, 2024
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Commits on Mar 4, 2024

  1. Merge branch 'dev' into textual-create

    @ewels
    ewels committed Mar 4, 2024
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Commits on Mar 6, 2024

  1. some fixes after merging dev to textual-create branch

    @mirpedrol
    mirpedrol committed Mar 6, 2024
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  2. fix packaging. Thanks @mashehu for the debugging help

    @mirpedrol
    mirpedrol committed Mar 6, 2024
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Commits on Mar 7, 2024

  1. add changed from dev branch to create.py script

    @mirpedrol
    mirpedrol committed Mar 7, 2024
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  2. fix back button after validation of basic details

    @mirpedrol
    mirpedrol committed Mar 7, 2024
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  3. move button to close logging screen to the bottom

    @mirpedrol
    mirpedrol committed Mar 7, 2024
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  4. Merge branch 'dev' of https://github.com/nf-core/tools into textual-c… 

    …reate
    @mirpedrol
    mirpedrol committed Mar 7, 2024
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Commits on Apr 2, 2024

  1. Fix merge conflicts

    @ewels
    ewels committed Apr 2, 2024
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  2. Remove duplicate lines in changelog from merge conflict resolution

    @ewels
    ewels committed Apr 2, 2024
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  3. Raw strings for nf-core ascii artwork 

    Avoids warnings about invalid escape sequences
    @ewels
    ewels committed Apr 2, 2024
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  4. Simplify log messages about CLI flags

    @ewels
    ewels committed Apr 2, 2024
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  5. Move logo to utils, fix alignment

    @ewels
    ewels committed Apr 2, 2024
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  6. Tweaks for welcome and pipeline type pages

    @ewels
    ewels committed Apr 2, 2024
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  7. Display tweaks

    @ewels
    ewels committed Apr 2, 2024
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  8. Tidy up design for GitHub repo creation page

    @ewels
    ewels committed Apr 2, 2024
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Commits on Apr 3, 2024

  1. [automated] Fix code linting

    @nf-core-bot
    nf-core-bot committed Apr 3, 2024
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  2. Merge branch 'dev' of github.com:nf-core/tools into textual-create 

    # Conflicts:
#	tests/lint/multiqc_config.py
    @mashehu
    mashehu committed Apr 3, 2024
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  3. update create app snapshots

    @mirpedrol
    mirpedrol committed Apr 3, 2024
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  4. fix providing a prefix twitha template yaml

    @mirpedrol
    mirpedrol committed Apr 3, 2024
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  5. update error message in create pipeline test

    @mirpedrol
    mirpedrol committed Apr 3, 2024
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  6. not show pipeline logging when creating a repo

    @mirpedrol
    mirpedrol committed Apr 3, 2024
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  7. fix pipeline create tests

    @mirpedrol
    mirpedrol committed Apr 3, 2024
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  8. use org instead of prefix in pipeline template

    @mirpedrol
    mirpedrol committed Apr 3, 2024
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Commits on Apr 5, 2024

  1. add 'back' button if the pipeline exists

    @mirpedrol
    mirpedrol committed Apr 5, 2024
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  2. add option to set repo name

    @mirpedrol
    mirpedrol committed Apr 5, 2024
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  3. show help if repo already exists

    @mirpedrol
    mirpedrol committed Apr 5, 2024
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  4. hide buttons not used in logging screen

    @mirpedrol
    mirpedrol committed Apr 5, 2024
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  5. fix threads and messages

    @mirpedrol
    mirpedrol committed Apr 5, 2024
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  6. update test snapshots

    @mirpedrol
    mirpedrol committed Apr 5, 2024
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  7. allow selecting a github organisation

    @mirpedrol
    mirpedrol committed Apr 5, 2024
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Commits on Apr 8, 2024

  1. Some tweaks to text strings

    @ewels
    ewels committed Apr 8, 2024
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  2. Merge branch 'textual-create' into textual-create-changes

    @ewels
    ewels committed Apr 8, 2024
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  3. Merge pull request #6 from mirpedrol/textual-create-changes 

    Add last changes to Textual create
    @ewels
    ewels committed Apr 8, 2024
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  4. Whitespace etc

    @ewels
    ewels committed Apr 8, 2024
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Commits on Apr 11, 2024

  1. push s allcreens, not switch

    @mirpedrol
    mirpedrol committed Apr 11, 2024
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  2. always push files to the remote repo

    @mirpedrol
    mirpedrol committed Apr 11, 2024
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  3. fix going back from nf-core to custom pipeline

    @mirpedrol
    mirpedrol committed Apr 11, 2024
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  4. fix logging screen by using a class to hide buttons

    @mirpedrol
    mirpedrol committed Apr 11, 2024
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Commits on Apr 12, 2024

  1. remove force switch and always force, show warning

    @mirpedrol
    mirpedrol committed Apr 12, 2024
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  2. add warning if github org not found

    @mirpedrol
    mirpedrol committed Apr 12, 2024
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  3. Merge branch 'dev' of https://github.com/nf-core/tools into textual-c… 

    …reate
    @mirpedrol
    mirpedrol committed Apr 12, 2024
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  4. update snapshots

    @mirpedrol
    mirpedrol committed Apr 12, 2024
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Commits on Apr 15, 2024

  1. fix providing outdir

    @mirpedrol
    mirpedrol committed Apr 15, 2024
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  2. try fixing pytests by using tmpdir instead of mock

    @mirpedrol
    mirpedrol committed Apr 15, 2024
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Commits on Apr 16, 2024

  1. fix outdir again to fix tests

    @mirpedrol
    mirpedrol committed Apr 16, 2024
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Commits on Apr 17, 2024

  1. debugging ci tests

    @mashehu
    mashehu committed Apr 17, 2024
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  2. try fixing outdir, again

    @mirpedrol
    mirpedrol committed Apr 17, 2024
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Commits on May 9, 2024

  1. Merge branch 'dev' of https://github.com/nf-core/tools into textual-c… 

    …reate
    @mirpedrol
    mirpedrol committed May 9, 2024
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  2. update snapshots

    @mirpedrol
    mirpedrol committed May 9, 2024
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  3. handle token not configured with gh

    @mirpedrol
    mirpedrol committed May 9, 2024
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Commits on May 10, 2024

  1. add asyncio to pytest.ini and upload snapshot report on fail on CI

    @mirpedrol
    mirpedrol committed May 10, 2024
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  2. wait for workers to complete

    @mirpedrol
    mirpedrol committed May 10, 2024
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  3. upload snapshot report always

    @mirpedrol
    mirpedrol committed May 10, 2024
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  4. upload snapshot report first

    @mirpedrol
    mirpedrol committed May 10, 2024
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  5. update snapshot from gitpod

    @mirpedrol
    mirpedrol committed May 10, 2024
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