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First draft output docs #48
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docs/output.md
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[Fastp](https://github.com/OpenGene/fastp) is a tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. | ||
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**Output directory: `preprocess/fastp`** | ||
* `sample.trim.fastq.gz` |
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* `sample.trim.fastq.gz` | |
* `<SAMPLE>.trim.fastq.gz` |
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Maybe use that notation throughout?
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Okay I'll replace the rest of the samples and finish polishing it a little bit more.
docs/output.md
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@@ -27,6 +47,247 @@ For further reading and documentation see the [FastQC help](http://www.bioinform | |||
* `zips/sample_fastqc.zip` | |||
* zip file containing the FastQC report, tab-delimited data file and plot images | |||
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### Quality filtering and adaptor rrimming |
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### Quality filtering and adaptor rrimming | |
### Quality filtering and adapter trimming |
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Couple of quick things I spotted :) I'll have a proper look when you have finished.
nf-core/viralrecon pull request
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nextflow run . -profile test,docker
).nf-core lint .
).docs
is updatedCHANGELOG.md
is updatedREADME.md
is updatedLearn more about contributing: CONTRIBUTING.md