Add documentation about how to customise containers, args, and tweak resources #1646
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As requested here: nf-core/viralrecon#348
Closes #1643
Note I also transferred over from viralrecon the containers update, and clarified a few things on the resource tweaks.
Once this is in, I'll replace the template docs to point to these docs rather than have the current wordy RNASEQ example.