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TODO for Bioconductor #15

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nhejazi opened this issue Feb 6, 2017 · 1 comment

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nhejazi commented Feb 6, 2017 •

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To-do list based on comments from the in-progress Bioconductor review:

switch illuminaData to use the SummarizedExperiment package and class
change biomarkertmle to accept input as objects of class SummarizedExperiment
re-write the biotmle class to simply exist as a subclass of SummarizedExperiment
explicitly check the "type" argument when first calling the biomarkertmle function
re-write heatmap function to make use of the SuperHeat package (see this issue)

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[PRE REVIEW]: biotmle: Targeted Learning for Biomarker Discovery openjournals/joss-reviews#156

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nhejazi commented Apr 4, 2017

all changes completed as of 337cc21

nhejazi closed this as completed

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