PRFPY - Validation Framework

This repository is an extension of implementing into the validation framework. This way, we ensure our toolbox is consistent with the other toolboxes already validated in .

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To easify the following process, create a link to the directory that contains the data and should be used for the output:

export basedir=/path/to/folder

Synthesize

For a detailed describing on how the synthesis of new data work please see .

The main steps are:

1. Create a configuration file

docker run --rm -it \ -v empty:/flywheel/v0/input/config.json \ -v $basedir:/flywheel/v0/output \ garikoitz/prfsynth

2. Rename the configuration file according to the subject number and session (date). Also fill in these numbers into the config file itself.

mv $basedir/prfsynth-config-defaults.json $basedir/prfsynth_sub-001_sess-20200320.json

3. Run the synthesis

docker run --rm -it \ -v $basedir/prfsynth_sub-001_sess-20200320.json:/flywheel/v0/input/config.json \ -v $basedir:/flywheel/v0/output \ garikoitz/prfsynth

Analysis

The integration into the validation framework is yet in progress. The analysis can be called when cloning the and executing inside the top level folder of prfanalyze-prfpy:

/PATH/TO/PRFmodel/gear/prfanalyze/run_prfanalyze.sh prfpy $basedir default_config.json

Report

1. Create a report configuration file

docker run --rm -it \ -v empty:/flywheel/v0/input/config.json \ -v $basedir:/flywheel/v0/output \ garikoitz/prfreport

2. Rename the file and edit the config file the above subject and session info:

mv $basedir/prfreport-configuration-defaults.json $basedir/prfreport-config_sub-001_sess-20200320.json

3. Run the creation of the report

docker run --rm -it \ -v $basedir/prfreport-config_sub-001_sess-20200320.json:/flywheel/v0/input/config.json \ -v $basedir:/flywheel/v0/output \ garikoitz/prfreport