Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add carpet plots for preprocessed and denoised BOLD data #32

Closed
tsalo opened this issue May 16, 2024 · 2 comments · Fixed by #49
Closed

Add carpet plots for preprocessed and denoised BOLD data #32

tsalo opened this issue May 16, 2024 · 2 comments · Fixed by #49
Labels
enhancement New feature or request

Comments

@tsalo
Copy link
Collaborator

tsalo commented May 16, 2024

What would you like to see added in this software?

The report will be pretty short if the only figure in there is the MELODIC components image.

Do you have any interest in helping implement the feature?

Yes

Additional information / screenshots

No response

@tsalo tsalo added the enhancement New feature or request label May 16, 2024
@tsalo
Copy link
Collaborator Author

tsalo commented Aug 7, 2024

Steps:

  1. Loop over preprocessed and various denoised files.
  2. Extract confounds from the input image (in MNI152NLin6Asym space)
    • Global signal
    • CSF
    • WM
    • FD
    • DVARS
  3. Warp carpet dseg from MNI152NLin2009cAsym to MNI152NLin6Asym.
  4. Just use carpet dseg for the carpet plot? Not sure if I want to go through the effort of collecting the crown mask and compcor mask from fMRIPrep (assuming they're written out).

@tsalo
Copy link
Collaborator Author

tsalo commented Aug 7, 2024

Do we want preproc vs. denoised GIFs?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant