[ENH] Added available inputs for MRTrix3's 5ttgen #926
Workflow file for this run
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name: Stable tests | |
# This file tests the claimed support range of nipype including | |
# | |
# * Operating systems: Linux, OSX | |
# * Dependencies: minimum requirements, optional requirements | |
# * Installation methods: setup.py, sdist, wheel, archive | |
on: | |
push: | |
branches: | |
- master | |
- maint/* | |
tags: | |
- "*" | |
pull_request: | |
branches: | |
- master | |
- maint/* | |
schedule: | |
# 8am EST / 9am EDT Mondays | |
- cron: "0 13 * * 1" | |
defaults: | |
run: | |
shell: bash | |
concurrency: | |
group: tests-${{ github.ref }} | |
cancel-in-progress: true | |
permissions: {} | |
jobs: | |
build: | |
permissions: | |
contents: read # to fetch code (actions/checkout) | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: 3 | |
- run: pip install --upgrade build twine | |
- name: Build sdist and wheel | |
run: python -m build | |
- run: twine check dist/* | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: dist | |
path: dist/ | |
test-package: | |
runs-on: ubuntu-latest | |
needs: [build] | |
strategy: | |
matrix: | |
package: ["wheel", "sdist"] | |
steps: | |
- uses: actions/download-artifact@v4 | |
with: | |
name: dist | |
path: dist/ | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: 3 | |
- name: Display Python version | |
run: python -c "import sys; print(sys.version)" | |
- name: Update pip | |
run: pip install --upgrade pip | |
- name: Install wheel | |
run: pip install dist/nipype-*.whl | |
if: matrix.package == 'wheel' | |
- name: Install sdist | |
run: pip install dist/nipype-*.tar.gz | |
if: matrix.package == 'sdist' | |
- run: python -c 'import nipype; print(nipype.__version__)' | |
- name: Install test extras | |
run: pip install nipype[tests] | |
- name: Run tests | |
run: pytest --doctest-modules -v --pyargs nipype | |
stable: | |
# Check each OS, all supported Python, minimum versions and latest releases | |
permissions: | |
contents: read # to fetch code (actions/checkout) | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: ["ubuntu-22.04"] | |
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
check: ["test"] | |
pip-flags: [""] | |
depends: ["REQUIREMENTS"] | |
deb-depends: [false] | |
nipype-extras: ["doc,tests,profiler"] | |
include: | |
- os: ubuntu-22.04 | |
python-version: "3.8" | |
check: test | |
pip-flags: "" | |
depends: REQUIREMENTS | |
deb-depends: true | |
nipype-extras: doc,tests,profiler,duecredit,ssh | |
- os: ubuntu-20.04 | |
python-version: 3.8 | |
check: test | |
pip-flags: "" | |
depends: REQUIREMENTS | |
deb-depends: true | |
nipype-extras: doc,tests,nipy,profiler,duecredit,ssh | |
env: | |
DEPENDS: ${{ matrix.depends }} | |
CHECK_TYPE: ${{ matrix.check }} | |
EXTRA_PIP_FLAGS: ${{ matrix.pip-flags }} | |
INSTALL_DEB_DEPENDENCIES: ${{ matrix.deb-depends }} | |
NIPYPE_EXTRAS: ${{ matrix.nipype-extras }} | |
INSTALL_TYPE: pip | |
CI_SKIP_TEST: 1 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Display Python version | |
run: python -c "import sys; print(sys.version)" | |
- name: Create virtual environment | |
run: tools/ci/create_venv.sh | |
- name: Build archive | |
run: | | |
source tools/ci/build_archive.sh | |
echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV | |
- name: Install Debian dependencies | |
run: tools/ci/install_deb_dependencies.sh | |
if: ${{ matrix.os == 'ubuntu-latest' }} | |
- name: Install dependencies | |
run: tools/ci/install_dependencies.sh | |
- name: Install Nipype | |
run: tools/ci/install.sh | |
- name: Run tests | |
run: tools/ci/check.sh | |
if: ${{ matrix.check != 'skiptests' }} | |
- uses: codecov/codecov-action@v4 | |
with: | |
file: coverage.xml | |
token: ${{ secrets.CODECOV_TOKEN }} | |
if: ${{ always() }} | |
- name: Upload pytest test results | |
uses: actions/upload-artifact@v4 | |
with: | |
name: pytest-results-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.deb-depends }} | |
path: test-results.xml | |
if: ${{ always() && matrix.check == 'test' }} | |
publish: | |
runs-on: ubuntu-latest | |
environment: "Package deployment" | |
needs: [stable, test-package] | |
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') | |
steps: | |
- uses: actions/download-artifact@v4 | |
with: | |
name: dist | |
path: dist/ | |
- uses: pypa/gh-action-pypi-publish@release/v1 | |
with: | |
user: __token__ | |
password: ${{ secrets.PYPI_API_TOKEN }} |