Workflows and interfaces for neuroimaging packages
Python Tcl HTML KiCad Shell Makefile
Latest commit ee9f405 Sep 25, 2016 @satra satra committed on GitHub Merge pull request #1662 from shoshber/multiprocagain
TST multiproc test fix, part 2
Permalink
Failed to load latest commit information.
bin add nipype_display_pklz in bin Sep 1, 2016
doc Update grabbing_and_sinking.rst Sep 16, 2016
docker reverting Sep 11, 2016
examples Merge remote-tracking branch 'upstream/master' into fix/FromFileWorkf… Sep 13, 2016
nipype Merge pull request #1662 from shoshber/multiprocagain Sep 25, 2016
tools reverted accidental change Sep 12, 2016
.coveragerc enh: added coveralls support Nov 1, 2013
.dockerignore travis: fixing coverage errors in the end of tests Aug 19, 2016
.gitattributes Update .gitattributes Mar 14, 2012
.gitignore cleaning up a few build and test elements Apr 27, 2016
.mailmap ENH: More end-of-line whitespace removed. Aug 17, 2015
.noserc add doctest-ignore-unicode Aug 11, 2016
.travis.yml Merge remote-tracking branch 'upstream/master' into enh/NewDVARSInter… Sep 12, 2016
CHANGES Merge branch 'enh/FSLb0calc' of https://github.com/oesteban/nipype in… Sep 15, 2016
CONTRIBUTING.md don't run setup.py in Makefile Jun 24, 2016
Dockerfile move nipype config file to entrypoint, fix test_spm #1538 Jul 20, 2016
INSTALL fix: docs build without any sphinx errors or warnings Sep 11, 2011
LICENSE update: license info May 5, 2016
MANIFEST.in fix: removed matlabscripts from manifest template Aug 9, 2015
Makefile make check-before-commit Aug 25, 2016
README.rst replaced the badge Sep 8, 2016
THANKS.rst doc: cleanup doc building and updated funding info Apr 19, 2016
Vagrantfile fix: updated Vagrantfile, fixed freesurfer test on osx, and fsl docte… Apr 7, 2016
build_docs.py multiple fixes for python 3 compatibility Aug 24, 2016
circle.yml iterate over xmls explicitly Sep 11, 2016
codecov.yml silence patch Sep 19, 2016
requirements.txt make nilearn optional Sep 16, 2016
setup.py [FIX] setup.py: remove future and configparse deps Sep 16, 2016
setup_egg.py [FIX] setup.py: remove future and configparse deps Sep 16, 2016

README.rst

NIPYPE: Neuroimaging in Python: Pipelines and Interfaces

https://travis-ci.org/nipy/nipype.png?branch=master https://circleci.com/gh/nipy/nipype/tree/master.svg?style=svg https://www.codacy.com/project/badge/182f27944c51474490b369d0a23e2f32 Latest Version Supported Python versions Development Status License Chat

Current neuroimaging software offer users an incredible opportunity to analyze data using a variety of different algorithms. However, this has resulted in a heterogeneous collection of specialized applications without transparent interoperability or a uniform operating interface.

Nipype, an open-source, community-developed initiative under the umbrella of NiPy, is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. Nipype provides an environment that encourages interactive exploration of algorithms from different packages (e.g., SPM, FSL, FreeSurfer, AFNI, Slicer, ANTS), eases the design of workflows within and between packages, and reduces the learning curve necessary to use different packages. Nipype is creating a collaborative platform for neuroimaging software development in a high-level language and addressing limitations of existing pipeline systems.

Nipype allows you to:

  • easily interact with tools from different software packages
  • combine processing steps from different software packages
  • develop new workflows faster by reusing common steps from old ones
  • process data faster by running it in parallel on many cores/machines
  • make your research easily reproducible
  • share your processing workflows with the community

Documentation

Please see the doc/README.txt document for information on our documentation.

Website

Information specific to Nipype is located here:

http://nipy.org/nipype

Support and Communication

If you have a problem or would like to ask a question about how to do something in Nipype please submit a question to NeuroStars.org with a nipype tag. NeuroStars.org is a platform similar to StackOverflow but dedicated to neuroinformatics. All previous Nipype questions are available here:

http://neurostars.org/t/nipype/

To participate in the Nipype development related discussions please use the following mailing list:

http://mail.python.org/mailman/listinfo/neuroimaging

Please add [nipype] to the subject line when posting on the mailing list.

Nipype structure

Currently Nipype consists of the following files and directories:

INSTALL
NIPYPE prerequisites, installation, development, testing, and troubleshooting.
README
This document.
THANKS
NIPYPE developers and contributors. Please keep it up to date!!
LICENSE
NIPYPE license terms.
doc/
Sphinx/reST documentation

examples/

nipype/
Contains the source code.
setup.py
Script for building and installing NIPYPE.

License information

We use the 3-clause BSD license; the full license is in the file LICENSE in the nipype distribution.

There are interfaces to some GNU code but these are entirely optional.

All trademarks referenced herein are property of their respective holders.

Copyright (c) 2009-2015, NIPY Developers All rights reserved.