Find Similar Alleles

Features:

• Find similar Alleles options with pyard command #264

Bug Fixes:

• V2 formats that are not valid #283
• MICA, MICB, HFE alleles that show up as V2 formats #280

1.0.6 Validation of allele specific MAC codes

• Use allele specific antigen code rules when validating MACs that cross antigen group similar to MAC Service
• Returns the original InvalidAlleleError instead of wrapping it in InvalidTypingError when an allele is not valid.

1.0.5 Non strict mode

Supports non-strict mode makes valid alleles by adding expression characters to invalid alleles.

Use non strict mode in config to reduce alleles that may be valid with expression characters.

>>> my_configs = {'strict': False, 'verbose_log': True}
>>> import pyard
>>> ard = pyard.init(config=my_configs, load_mac=False)

>>> ard.redux('A*24:329', 'lgx')
A*24:329 is not valid. Using A*24:329Q
'A*24:329Q'

>>> ard.redux('DQB1*03:276', 'lgx')
DQB1*03:276 is not valid. Using DQB1*03:276N
'DQB1*03:01'

Add non-strict and verbose modes to pyard CLI.

❯ pyard --gl "DQB1*03:276" -r lgx
Typing Error: DQB1*03:276 is not valid GL String.
 DQB1*03:276 is not a valid Allele

❯ pyard --non-strict --gl "DQB1*03:276" -r lgx
DQB1*03:01

❯ pyard --non-strict --verbose --gl "DQB1*03:276" -r lgx
DQB1*03:276 is not valid. Using DQB1*03:276N
DQB1*03:01

Fixes when used without login user

Fixed the OSError when running without a login user.

1.0.3 – Permission Errors and pyard updates

• Alert permission Errors when data_dir is not writable
• Add --lookup-mac and --expand-mac to pyard command

Fixes issue with using py-ard without MAC

Fixes issue with using py-ard without MAC

• When using py-ard with load_mac=False, check if the allele looks like a MAC

1.0.1 → Bug Fixes for 1.0.0 Release

Fixed bugs and added some niceties

#237 Additional functionalities for pyard CLI command enhancement
#235 Invalid allele in CWD2 mapping bug
#234 Success with lgx when given Invalid format bug
#233 validate endpoint can be a GET request enhancement
#230 Redux with a "P" option does not return P-groups for two-field or three-field alleles bug

Final Release 1.0.0

Release YAY!! 🎉

Fix PyPi Packaging

Include requirements.txt files

Batch Reduce Fixes

Bug fixes

• Fix issue when adding locus name to a serology value
• Fix issue when reducing an allele-list
• Account for lower case allele names