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Hi. Thank you for developing a useful tool.
I have run Epinano delta with public data (HEK293T) and I got the following error. Could you please help me fix it?
Traceback (most recent call last):
File "/usr/local/bin/EpiNano/misc/Epinano_make_delta.py", line 46, in <module>
with open (mod,'r') as fh:
FileNotFoundError: [Errno 2] No such file or directory: 'data/output/Epinano/HEK293T-rep1/wt.plus_strand.per.site.5mer.csv'
Traceback (most recent call last):
File "/usr/local/bin/EpiNano/Epinano_Predict.py", line 97, in <module>
predict_df = pd.read_csv (args['predict'],compression='gzip') if args['predict'].endswith ('.gz') else pd.read_csv (args['predict'])
File "/usr/local/lib/python3.6/site-packages/pandas/io/parsers.py", line 702, in parser_f
return _read(filepath_or_buffer, kwds)
File "/usr/local/lib/python3.6/site-packages/pandas/io/parsers.py", line 429, in _read
parser = TextFileReader(filepath_or_buffer, **kwds)
File "/usr/local/lib/python3.6/site-packages/pandas/io/parsers.py", line 895, in __init__
self._make_engine(self.engine)
File "/usr/local/lib/python3.6/site-packages/pandas/io/parsers.py", line 1122, in _make_engine
self._engine = CParserWrapper(self.f, **self.options)
File "/usr/local/lib/python3.6/site-packages/pandas/io/parsers.py", line 1853, in __init__
self._reader = parsers.TextReader(src, **kwds)
File "pandas/_libs/parsers.pyx", line 545, in pandas._libs.parsers.TextReader.__cinit__
pandas.errors.EmptyDataError: No columns to parse from file
The file that causes FileNotFoundError: [Errno 2] above, data/output/Epinano/HEK293T-rep1/wt.plus_strand.per.site.5mer.csv exists in the path. So I am not sure why I got the error.
(base) [ejkwon@hpcc04 ]$ ls data/output/Epinano/HEK293T-rep1/wt.plus_strand.per.site.5mer.csv
data/output/Epinano/HEK293T-rep1/wt.plus_strand.per.site.5mer.csv
Hi. Thank you for developing a useful tool.
I have run Epinano delta with public data (HEK293T) and I got the following error. Could you please help me fix it?
The file that causes FileNotFoundError: [Errno 2] above, data/output/Epinano/HEK293T-rep1/wt.plus_strand.per.site.5mer.csv exists in the path. So I am not sure why I got the error.
Also, here is the command line I run.
Could you please help me fix the error?
Thank you so much for your help.
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