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Dear all:
I just want to run ice_norm,but I meet this Warning
`Run HiC-Pro 3.1.0
Fri Jul 7 15:42:19 CST 2023
Run ICE Normalization ...
Logs: logs/1000000/ice_1000000.log
Warning : Matrix not found at 1000000 resolution in rawdata/1000000 - skip`
Dear all:
I just want to run ice_norm,but I meet this Warning
`Run HiC-Pro 3.1.0
Fri Jul 7 15:42:19 CST 2023
Run ICE Normalization ...
Logs: logs/1000000/ice_1000000.log
Warning : Matrix not found at 1000000 resolution in rawdata/1000000 - skip`
my bed file :
chrM 0 16569 1
chr1 0 1000000 2
chr1 1000000 2000000 3
chr1 2000000 3000000 4
chr1 3000000 4000000 5
chr1 4000000 5000000 6
chr1 5000000 6000000 7
chr1 6000000 7000000 8
chr1 7000000 8000000 9
chr1 8000000 9000000 10
chr1 9000000 10000000 11
matrix file:
0 0 1
0 1 544
0 3 1
0 22 1
0 53 1
0 54 1
0 56 1
0 62 1
0 69 1
0 87 1
config file:
#######################################################################
Contact Maps
#######################################################################
BIN_SIZE = 1000000
MATRIX_FORMAT = complete
#######################################################################
Normalization
#######################################################################
MAX_ITER = 100
FILTER_LOW_COUNT_PERC = 0.02
FILTER_HIGH_COUNT_PERC = 0
EPS = 0.1
my sh:
/public/home/qqfu/software/HiC-Pro/hicpro/HiC-Pro_3.1.0/bin/HiC-Pro -i /public/home/qqfu/data/HPV/PCA/test_ice/output/hic_results/matrix/
-o /public/home/qqfu/data/HPV/PCA/test_ice/output/
-c /public/home/qqfu/data/HPV/PCA/test_ice/config-hicpro.txt
-s ice_norm
Does anyone know how to go about solving this problem?
Thanks!
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