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16 jun21 dendrogram update #157

Merged
merged 19 commits into from
Aug 13, 2021
Merged

16 jun21 dendrogram update #157

merged 19 commits into from
Aug 13, 2021

Commits on Jul 15, 2021

  1. 16Jun21 dendrogram update 

    Note: child_cell_set_accessions of nomenclature_table_CCN202002013.tsv not yet updated
    @shawntanzk
    shawntanzk committed Jul 15, 2021
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Commits on Jul 19, 2021

  1. Added nomeclature_table csv for other taxonomies 

    Currently still missing child_cell_set_accessions column
    @shawntanzk
    shawntanzk committed Jul 19, 2021
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  2. Update nomenclature_table_CCN202103220.csv

    @shawntanzk
    shawntanzk committed Jul 19, 2021
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Commits on Jul 20, 2021

  1. 20 July update for cell_set_nomenclature.xlsx 

    20 July update notes:

added child cell set accessions

deleted most of the subclass cell sets for the integrated (cross-species) taxonomy
    @shawntanzk
    shawntanzk committed Jul 20, 2021
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  2. 20 July update for nomenclature tables 

    Notes:

Added Child accession

Updated with latest file
    @shawntanzk
    shawntanzk committed Jul 20, 2021
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Commits on Jul 27, 2021

  1. Update CCN202002013.json 

    26 July update to Mouse json file
    @shawntanzk
    shawntanzk committed Jul 27, 2021
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  2. Added 26Jul21 Human json file

    @shawntanzk
    shawntanzk committed Jul 27, 2021
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  3. 26Jul21 update of cell_set_nomenclature.xlsx

    @shawntanzk
    shawntanzk committed Jul 27, 2021
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  4. Merge branch '16Jun21-Dendrogram-Update' of https://github.com/obophe… 

    …notype/brain_data_standards_ontologies into 16Jun21-Dendrogram-Update
    @shawntanzk
    shawntanzk committed Jul 27, 2021
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  5. 26Jul21 update of nomenclature tables

    @shawntanzk
    shawntanzk committed Jul 27, 2021
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  6. Marmoset dendrogram

    @shawntanzk
    shawntanzk committed Jul 27, 2021
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Commits on Aug 4, 2021

  1. Update CS202002013_Allen_markers.tsv

    @shawntanzk
    shawntanzk committed Aug 4, 2021
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  2. Update CS202002013_Allen_markers.tsv

    @shawntanzk
    shawntanzk committed Aug 4, 2021
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Commits on Aug 5, 2021

  1. X-like GABAergic Implementation (Mus) 

    X-like implementation for mouse taxonomy
Related to #151 & #154
    @shawntanzk
    shawntanzk committed Aug 5, 2021
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Commits on Aug 13, 2021

  1. Update taxonomy_details.yaml 

    removed CS202002013_258, 259, 260, 261 -> move to taxonomy curation
    @shawntanzk
    shawntanzk committed Aug 13, 2021
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  2. Update taxonomy_details.yaml 

    added updated mappings
    @shawntanzk
    shawntanzk committed Aug 13, 2021
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  3. source and tests adapted to the new nomenclature table structure

    @hkir-dev
    hkir-dev committed Aug 13, 2021
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  4. Merge branch '16Jun21-Dendrogram-Update' of https://github.com/obophe… 

    …notype/brain_data_standards_ontologies into 16Jun21-Dendrogram-Update
    @hkir-dev
    hkir-dev committed Aug 13, 2021
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  5. Update taxonomy_details.yaml 

    remove taxonomy nodes
    @shawntanzk
    shawntanzk committed Aug 13, 2021
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