adding travis job: this may fail due to memory requirements

.travis.yml

@@ -0,0 +1,29 @@
+language: java
+jdk:
+  - openjdk7
+
+before_script:
+  - mkdir -p bin
+  - export PATH=$PATH:$PWD/bin
+  - wget http://build.berkeleybop.org/userContent/owltools/owltools -O bin/owltools
+  - wget http://build.berkeleybop.org/userContent/owltools/ncbi2owl -O bin/ncbi2owl
+  - wget http://build.berkeleybop.org/userContent/owltools/ontology-release-runner -O bin/ontology-release-runner
+  - wget http://build.berkeleybop.org/userContent/owltools/owltools-runner-all.jar -O bin/owltools-runner-all.jar
+  - wget http://build.berkeleybop.org/userContent/owltools/owltools-oort-all.jar -O bin/owltools-oort-all.jar
+  - chmod +x bin/*
+
+# command to run tests
+script: make test
+
+#after_success:
+#  coveralls
+
+# whitelist
+branches:
+  only:
+    - master
+
+notifications:
+  email:
+    - cjmungall@lbl.gov
+

Makefile

@@ -2,6 +2,8 @@ all: ncbitaxon.obo
 NCBI_MEMORY=8G
 OORT_MEMORY=$(NCBI_MEMORY)
 
+test: all
+
 taxonomy.dat:
 	wget ftp://ftp.ebi.ac.uk/pub/databases/taxonomy/$@ -O $@.tmp && mv $@.tmp $@
 

README.md

@@ -1,3 +1,7 @@
+[![DOI](https://zenodo.org/badge/13996/cmungall/ncbitaxon.svg)](https://zenodo.org/badge/latestdoi/13996/cmungall/ncbitaxon)
+
+[![Build Status](https://travis-ci.org/cmungall/ncbitaxon.svg?branch=master)](https://travis-ci.org/cmungall/ncbitaxon)
+
 # Build for NCBITaxon Ontology
 
 The NCBITaxon ontology is an automatic translation of the [NCBI taxonomy database](http://www.ncbi.nlm.nih.gov/taxonomy) into obo/owl.

mappings/Makefile

@@ -0,0 +1,8 @@
+env_eol_mapping_to_taxonomies.tar.gz:
+	wget http://environments.jensenlab.org/$@ -O $@
+
+mappings_eolids_ncbitaxids.tsv: env_eol_mapping_to_taxonomies.tar.gz
+	tar -zxvf $< && touch $@
+
+ncbitaxon-to-eol.obo: mappings_eolids_ncbitaxids.tsv
+	./eolmap2obo.pl $< > $@