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ro.owl is using GO:synapse part (GO:0044456) which is obsolete #530

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matentzn opened this issue Dec 3, 2021 · 6 comments · May be fixed by #573
Open

ro.owl is using GO:synapse part (GO:0044456) which is obsolete #530

matentzn opened this issue Dec 3, 2021 · 6 comments · May be fixed by #573
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GO Related to Gene Ontology (GO) obsolete This includes both obsolete and merge requests

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@matentzn
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matentzn commented Dec 3, 2021

Remove or replace usage.
@nlharris nlharris added obsolete This includes both obsolete and merge requests GO Related to Gene Ontology (GO) labels Jan 4, 2022
@nlharris
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Are we hoping for a volunteer to do this?

@balhoff balhoff linked a pull request Feb 17, 2022 that will close this issue
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balhoff commented Feb 17, 2022

I volunteer.

@dosumis
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dosumis commented Feb 17, 2022

Is it used in a domain or range? If so, would be good to replace with "'part of' some synapse", to preserve intended semantics.

@balhoff
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balhoff commented Feb 17, 2022

@dosumis see here: #573 (comment)

It's embedded in a Manchester-syntax expansion.

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This issue has not seen any activity in the past 2 years. It will be closed automatically 60 days from now if no action is taken.

@github-actions github-actions bot added the stale label Nov 12, 2023
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This issue has been closed automatically because it has not been updated in over two years. Please re-open if you still need this to be addressed.

@github-actions github-actions bot closed this as not planned Won't fix, can't repro, duplicate, stale Feb 10, 2024
nlharris added a commit that referenced this issue Feb 10, 2024
@nlharris
Correct number of days in 2 years (730, not 630)
2bc4a23 
I wondered why issue #530 was closed as not having seen any activity in 2 years when it hadn't been 2 years. This is why: this workflow had
>  days-before-issue-stale: 630
when it should be 730.
@nlharris nlharris mentioned this issue Feb 10, 2024
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@anitacaron anitacaron reopened this Feb 12, 2024
anitacaron pushed a commit that referenced this issue Feb 12, 2024
@nlharris
Correct number of days in 2 years (730, not 630) (#786)
1d6435b 
I wondered why issue #530 was closed as not having seen any activity in 2 years when it hadn't been 2 years. This is why: this workflow had
>  days-before-issue-stale: 630
when it should be 730.
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GO Related to Gene Ontology (GO) obsolete This includes both obsolete and merge requests
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Remove some unused GO terms, one of which is obsolete in GO. oborel/obo-relations
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@dosumis @balhoff @nlharris @anitacaron @matentzn