Installation problems

[hbsong-03]

Thank you for this great tool.
I am starting to install it on Ubuntu 20.04, and met with multiple FileNotFound Errors. Are there any dependencies not listed?
Here are the errors:
(base) nc1@nc1-UA9C-R38:/equidock_public-main$ # Extract the raw PDB files:
(base) nc1@nc1-UA9C-R38:/equidock_public-main$ python3 project/datasets/builder/extract_raw_pdb_gz_archives.py project/datasets/DIPS/raw/pdb
python3: can't open file '/home/nc1/equidock_public-main/project/datasets/builder/extract_raw_pdb_gz_archives.py': [Errno 2] No such file or directory
(base) nc1@nc1-UA9C-R38:/equidock_public-main$
(base) nc1@nc1-UA9C-R38:/equidock_public-main$ # Process the raw PDB data into associated pair files:
(base) nc1@nc1-UA9C-R38:/equidock_public-main$ python3 project/datasets/builder/make_dataset.py project/datasets/DIPS/raw/pdb project/datasets/DIPS/interim --num_cpus 28 --source_type rcsb --bound
python3: can't open file '/home/nc1/equidock_public-main/project/datasets/builder/make_dataset.py': [Errno 2] No such file or directory
(base) nc1@nc1-UA9C-R38:/equidock_public-main$
(base) nc1@nc1-UA9C-R38:/equidock_public-main$ # Apply additional filtering criteria:
(base) nc1@nc1-UA9C-R38:/equidock_public-main$ python3 project/datasets/builder/prune_pairs.py project/datasets/DIPS/interim/pairs project/datasets/DIPS/filters project/datasets/DIPS/interim/pairs-pruned --num_cpus 28
python3: can't open file '/home/nc1/equidock_public-main/project/datasets/builder/prune_pairs.py': [Errno 2] No such file or directory

[AxelGiottonini]

Hey !

It might be a bit late but if anyone encounters the same problem...

It seems that you are trying to run the DIPS builder which is not provided in the EquiDock project. You can either use the data available online https://www.dropbox.com/s/sqknqofy58nlosh/DIPS.zip?dl=0 or if you really want to build it by yourself you need to clone DIPS-Plus first here https://github.com/amorehead/DIPS-Plus.

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Sincerely meow