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[QUESTION] Partially phased VCF as input #106

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davidyuyuan opened this issue Jul 20, 2024 · 0 comments
Open

[QUESTION] Partially phased VCF as input #106

davidyuyuan opened this issue Jul 20, 2024 · 0 comments

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@davidyuyuan
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davidyuyuan commented Jul 20, 2024 •
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(I was unable to find an answer by reading the documentation.)

If an input VCF is partially phased, would Shapeit5 apply its phasing logic to all variants regardless they are phased or not?
Or, it would only try to phase the variants yet to be phased?
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