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Using the sample file provided in the thread and correcting validation errors shows that the original metadata (stored in 2003-FC spec) gets lost when going through the transform update process. The particular transform the issue occurs with is 2008-09-to-2009-09.xsl
The data that gets lost is stored using the OriginalMetadata tag such as below (adding the CA namespace didn't resolve the issue):
As a follow up to this a PR has been opened which aims to resolve this bug (#144) along with some new unit tests showing the original failure (ome/bioformats#3695).
Issue is a follow up to image.sc thread https://forum.image.sc/t/bio-formats-returns-all-metadata-except-ome-meta-data/52295/2
Using the sample file provided in the thread and correcting validation errors shows that the original metadata (stored in 2003-FC spec) gets lost when going through the transform update process. The particular transform the issue occurs with is
2008-09-to-2009-09.xsl
The data that gets lost is stored using the
OriginalMetadata
tag such as below (adding the CA namespace didn't resolve the issue):In the transform this should be handled by the following, transforming the metadata to an XMLAnnotation:
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