Use requests for HTTP/HTTPS calls in library #240

chris-allan · 2020-08-04T13:57:29Z

CentOS 7 ships with version 1.0.2k of OpenSSL. These versions of OpenSSL had various forms of global state that the Ice developers decided, likely for a very good reason, to cleanup when the Ice OpenSSL engine is destroyed:

https://github.com/zeroc-ice/ice/blob/3.6/cpp/src/IceSSL/OpenSSLEngine.cpp#L350

Unfortunately, calling EVP_Cleanup() like this causes the global algorithms table to end up missing and/or corrupt:

This will break other uses of OpenSSL in the same process. The most obvious condition where this can occur is making an HTTPS request after an OMERO session has been closed. For example (Ubuntu 16.04, OpenSSL 1.0.2g):

$ omero shell --login
Created session for chris.allan@localhost:4064. Idle timeout: 10 min. Current group: chris.allan
Python 3.5.2 (default, Oct  8 2019, 13:06:37)
Type 'copyright', 'credits' or 'license' for more information
IPython 7.9.0 -- An enhanced Interactive Python. Type '?' for help.

In [1]: client.closeSession()

In [2]: import urllib

In [3]: urllib.request.urlopen('http://www.glencoesoftware.com/').read()
---------------------------------------------------------------------------
SSLError                                  Traceback (most recent call last)
<ipython-input-3-474f67ef9573> in <module>
----> 1 urllib.request.urlopen('http://www.glencoesoftware.com/').read()

/usr/lib/python3.5/urllib/request.py in urlopen(url, data, timeout, cafile, capath, cadefault, context)
    161     else:
    162         opener = _opener
--> 163     return opener.open(url, data, timeout)
    164
    165 def install_opener(opener):

/usr/lib/python3.5/urllib/request.py in open(self, fullurl, data, timeout)
    470         for processor in self.process_response.get(protocol, []):
    471             meth = getattr(processor, meth_name)
--> 472             response = meth(req, response)
    473
    474         return response

/usr/lib/python3.5/urllib/request.py in error(self, proto, *args)
    502             http_err = 0
    503         args = (dict, proto, meth_name) + args
--> 504         result = self._call_chain(*args)
    505         if result:
    506             return result

/usr/lib/python3.5/urllib/request.py in _call_chain(self, chain, kind, meth_name, *args)
    442         for handler in handlers:
    443             func = getattr(handler, meth_name)
--> 444             result = func(*args)
    445             if result is not None:
    446                 return result

/usr/lib/python3.5/urllib/request.py in http_error_302(self, req, fp, code, msg, headers)
    694         fp.close()
    695
--> 696         return self.parent.open(new, timeout=req.timeout)
    697
    698     http_error_301 = http_error_303 = http_error_307 = http_error_302

/usr/lib/python3.5/urllib/request.py in open(self, fullurl, data, timeout)
    464             req = meth(req)
    465
--> 466         response = self._open(req, data)
    467
    468         # post-process response

/usr/lib/python3.5/urllib/request.py in _open(self, req, data)
    482         protocol = req.type
    483         result = self._call_chain(self.handle_open, protocol, protocol +
--> 484                                   '_open', req)
    485         if result:
    486             return result

/usr/lib/python3.5/urllib/request.py in _call_chain(self, chain, kind, meth_name, *args)
    442         for handler in handlers:
    443             func = getattr(handler, meth_name)
--> 444             result = func(*args)
    445             if result is not None:
    446                 return result

/usr/lib/python3.5/urllib/request.py in https_open(self, req)
   1295         def https_open(self, req):
   1296             return self.do_open(http.client.HTTPSConnection, req,
-> 1297                 context=self._context, check_hostname=self._check_hostname)
   1298
   1299         https_request = AbstractHTTPHandler.do_request_

/usr/lib/python3.5/urllib/request.py in do_open(self, http_class, req, **http_conn_args)
   1221
   1222         # will parse host:port
-> 1223         h = http_class(host, timeout=req.timeout, **http_conn_args)
   1224         h.set_debuglevel(self._debuglevel)
   1225

/usr/lib/python3.5/http/client.py in __init__(self, host, port, key_file, cert_file, timeout, source_address, context, check_hostname)
   1251             self.cert_file = cert_file
   1252             if context is None:
-> 1253                 context = ssl._create_default_https_context()
   1254             will_verify = context.verify_mode != ssl.CERT_NONE
   1255             if check_hostname is None:

/usr/lib/python3.5/ssl.py in create_default_context(purpose, cafile, capath, cadata)
    439         raise TypeError(purpose)
    440
--> 441     context = SSLContext(PROTOCOL_SSLv23)
    442
    443     # SSLv2 considered harmful.

/usr/lib/python3.5/ssl.py in __new__(cls, protocol, *args, **kwargs)
    359
    360     def __new__(cls, protocol, *args, **kwargs):
--> 361         self = _SSLContext.__new__(cls, protocol)
    362         if protocol != _SSLv2_IF_EXISTS:
    363             self.set_ciphers(_DEFAULT_CIPHERS)

SSLError: ('failed to allocate SSL context',)

The easiest way to work around this is to bring pyopenssl, which is linked against a version of OpenSSL we control, into the equation. In order to have both OpenSSL versions functional in the process we need to use a Python package that is mindful of these conditions and will optionally use pyopenssl if it is available. requests is such a package. Using requests with pyopenssl installed this should be your output:

$ omero shell --login
Using session for chris.allan@localhost:4064. Idle timeout: 10 min. Current group: chris.allan
Python 3.5.2 (default, Oct  8 2019, 13:06:37)
Type 'copyright', 'credits' or 'license' for more information
IPython 7.9.0 -- An enhanced Interactive Python. Type '?' for help.

In [1]: client.closeSession()

In [2]: import requests

In [3]: r = requests.get('https://www.glencoesoftware.com/')

In [4]: r.status_code
Out[4]: 200

In [5]:

This PR makes changes to the usage of urllib in the library to use requests instead.

manics · 2020-08-04T14:10:52Z

setup.py

@@ -216,6 +216,7 @@ def read(fname):
        'PyYAML',
        'zeroc-ice>=3.6.4,<3.7',
        'pywin32; platform_system=="Windows"',
+        'requests'


Are you intentionally keeping pyopenssl as an optional dependency? It's not installed by default:
https://github.com/psf/requests/blob/2d39c0db054e158767ab4a755476844fe40787e7/setup.py#L105

Yes, definitely intentional. Don't want to force it on people if they don't need/want it.

joshmoore

In general:

😮
👍 for requests
😮

Thanks, @chris-allan

chris-allan · 2020-08-04T14:17:31Z

/cc @kkoz

snoopycrimecop · 2020-08-05T00:46:38Z

Conflicting PR. Removed from build OMERO-python-superbuild-push#403. See the console output for more details.
Possible conflicts:

PR Replace ~/omero with standard OS-dependent paths #233 manics 'Replace ~/omero with standard OS-dependent paths'
- src/omero/plugins/import.py

~~--conflicts~~ Conflict resolved in build OMERO-python-superbuild-push#404. See the console output for more details.

manics

Now that socket is removed this comment is out of date:

omero-py/src/omero/util/upgrade_check.py

Lines 49 to 52 in fa8d3b9

    
           # 
        
           # Default timeout is 3 seconds. 
        
           # * http://docs.python.org/2/library/socket.html#socket.setdefaulttimeout 
        
           #

Testing locally using the docstring

omero-py/src/omero/util/upgrade_check.py

Lines 26 to 32 in fa8d3b9

    
               >>> from omero.util.upgrade_check import UpgradeCheck 
        
               >>> uc = UpgradeCheck("doctest") 
        
               >>> uc.run() 
        
               >>> uc.isUpgradeNeeded() 
        
               False 
        
               >>> uc.isExceptionThrown() 
        
               False

In [7]: from omero.util.upgrade_check import UpgradeCheck

In [8]: uc = UpgradeCheck("this is a test of omero-py#240")

In [9]: uc.run()
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
<ipython-input-9-64938cb9ef1c> in <module>
----> 1 uc.run()

~/anaconda3/envs/tmp/lib/python3.6/site-packages/omero/util/upgrade_check.py in run(self)
    144             self._set(None, None)
    145         else:
--> 146             self.log.warn("UPGRADE AVAILABLE:" + result.decode('utf-8'))
    147             self._set(result.decode('utf-8'), None)

AttributeError: 'str' object has no attribute 'decode'

request.text is a string not bytes.

manics · 2020-08-05T08:45:25Z

src/omero/util/upgrade_check.py

-import urllib.request, urllib.parse, urllib.error
-import socket
+import requests
+standard_library.install_aliases()


@joshmoore Can we get rid of this? Sounds like it's only required for Python 2.7 support https://python-future.org/quickstart.html#to-convert-existing-python-3-code

@manics: Thought about doing that here but wanted to keep the changes to what were required to do the job. I saw some other weird stuff like this when doing my review of urllib usage:

omero-py/src/omero/util/sessions.py

Lines 38 to 42 in fa8d3b9

try:

from urllib.parse import quote, unquote

except ImportError:

# Python2

from urllib.parse import quote, unquote

Can we get rid of this?

Don't see why not.

mtbc · 2020-08-05T12:27:32Z

# requests timeout, default is no timeout
# * https://requests.readthedocs.io/en/master/user/quickstart/#timeouts
#
DEFAULT_TIMEOUT = 6.0

reads oddly contradictorily but perhaps it makes sense?

manics

LGTM assuming tomorrow's tests pass- test for this is in the openmicroscopy repo: https://github.com/ome/openmicroscopy/blob/v5.6.2/components/tools/OmeroPy/test/integration/test_util.py

jburel · 2020-08-07T17:26:29Z

No test failure today
merging

As of (psf/requests#5443) released in requests 2.24.0 [1] the urllib3 monkeypatching in of pyopenssl now only happens if the SNI is unavailable (mostly just Python 2). The prevailing intent within the requests project seems to be to avoid pyopenssl use where possible. Obviously, this is not what we need so we're going to have to follow the requests and urllib3 advice to do it explictly. I have chosen to only perform the explicit injection for the upgrade check. Other uses of requests which want to avoid the sort of weird OpenSSL errors like those outlined in (ome#240) will need to do the same thing.

As of (psf/requests#5443) released in requests 2.24.0 [1] the urllib3 monkeypatching in of pyopenssl now only happens if the SNI is unavailable (mostly just Python 2). The prevailing intent within the requests project seems to be to avoid pyopenssl use where possible. Obviously, this is not what we need so we're going to have to follow the requests and urllib3 advice to do it explictly. I have chosen to only perform the explicit injection for the upgrade check. Other uses of requests which want to avoid the sort of weird OpenSSL errors like those outlined in (ome#240) will need to do the same thing. 1. https://github.com/psf/requests/blob/main/HISTORY.md#2240-2020-06-17

Repository: ome/omero-py Excluded PRs: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see ome#289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#708 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/708/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (user: joshmoore) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (user: will-moore) - PR 34 chris-allan 'Initial support for Event' (user: chris-allan) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (user: chris-allan) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (user: chris-allan) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see #289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (user: jburel) - PR 173 will-moore 'ROI export with Well ID' (user: will-moore) - PR 103 joshmoore 'Script for calculating min/max' (user: joshmoore) Already up-to-date. Repository: ome/omero-web Excluded PRs: - PR 313 emilroz 'Add option to hide "Forgot Password"' (user: emilroz) - PR 308 kkoz 'Obj id bitmask endpoint' (user: kkoz) - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (user: manics) - PR 225 will-moore 'Query string ids' (user: will-moore) - PR 224 manics 'WIP: Rewrite Dockerfile' (user: manics) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (user: bramalingam) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (user: manics) - PR 168 stick 'Changes to nginx @maintenance handler' (user: stick) - PR 142 manics 'omero.web.secure defaults to true' (user: manics) - PR 64 manics 'Remove omero_ext.argparse' (user: manics) - PR 63 manics 'Web templating with Jinja 2' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#708 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/708/)

…ssl (See ome#240))

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (user: joshmoore) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (user: will-moore) - PR 34 chris-allan 'Initial support for Event' (user: chris-allan) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (user: chris-allan) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (user: chris-allan) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 307 lldelisle 'change `input` to `input_val`' (user: lldelisle) - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see #289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (user: jburel) - PR 173 will-moore 'ROI export with Well ID' (user: will-moore) - PR 103 joshmoore 'Script for calculating min/max' (user: joshmoore) Already up-to-date. Repository: ome/omero-web Excluded PRs: - PR 324 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 323 will-moore 'Filtering handles ampersands in image names' (user: will-moore) - PR 313 emilroz 'Add option to hide "Forgot Password"' (user: emilroz) - PR 308 kkoz 'Obj id bitmask endpoint' (user: kkoz) - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (user: manics) - PR 225 will-moore 'Query string ids' (user: will-moore) - PR 224 manics 'WIP: Rewrite Dockerfile' (user: manics) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (user: bramalingam) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (user: manics) - PR 168 stick 'Changes to nginx @maintenance handler' (user: stick) - PR 142 manics 'omero.web.secure defaults to true' (user: manics) - PR 64 manics 'Remove omero_ext.argparse' (user: manics) - PR 63 manics 'Web templating with Jinja 2' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#721 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/721/)

…ssl (See ome#240))

Repository: ome/omero-py Excluded PRs: - PR 307 lldelisle 'change `input` to `input_val`' (user: lldelisle) - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see ome#289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' Generated by OMERO-python-superbuild-push#848 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/848/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (state: failure) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (state: failure) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (exclude comment) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 307 lldelisle 'change `input` to `input_val`' (user: lldelisle) - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see #289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (state: failure) Already up-to-date. Merged PRs: - PR 103 joshmoore 'Script for calculating min/max' - PR 173 will-moore 'ROI export with Well ID' Repository: ome/omero-web Excluded PRs: - PR 324 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (exclude comment) - PR 224 manics 'WIP: Rewrite Dockerfile' (exclude comment) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (exclude comment) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (exclude comment) - PR 168 stick 'Changes to nginx @maintenance handler' (state: failure) - PR 142 manics 'omero.web.secure defaults to true' (state: failure) - PR 64 manics 'Remove omero_ext.argparse' (exclude comment) - PR 63 manics 'Web templating with Jinja 2' (state: failure) Already up-to-date. Merged PRs: - PR 225 will-moore 'Query string ids' - PR 308 kkoz 'Obj id bitmask endpoint' - PR 323 will-moore 'Filtering handles ampersands in image names' Conflicting PRs (not included): - PR 313 emilroz 'Add option to hide "Forgot Password"' Generated by OMERO-python-superbuild-push#848 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/848/)

…ssl (See ome#240))

Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see ome#289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' - PR 307 lldelisle 'change `input` to `input_val`' Generated by OMERO-python-superbuild-push#849 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/849/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (state: failure) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (state: failure) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (exclude comment) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see #289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' - PR 307 lldelisle 'change `input` to `input_val`' Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (state: failure) Already up-to-date. Merged PRs: - PR 103 joshmoore 'Script for calculating min/max' - PR 173 will-moore 'ROI export with Well ID' Repository: ome/omero-web Excluded PRs: - PR 324 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (exclude comment) - PR 224 manics 'WIP: Rewrite Dockerfile' (exclude comment) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (exclude comment) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (exclude comment) - PR 168 stick 'Changes to nginx @maintenance handler' (state: failure) - PR 142 manics 'omero.web.secure defaults to true' (state: failure) - PR 64 manics 'Remove omero_ext.argparse' (exclude comment) - PR 63 manics 'Web templating with Jinja 2' (state: failure) Already up-to-date. Merged PRs: - PR 225 will-moore 'Query string ids' - PR 308 kkoz 'Obj id bitmask endpoint' - PR 323 will-moore 'Filtering handles ampersands in image names' Conflicting PRs (not included): - PR 313 emilroz 'Add option to hide "Forgot Password"' Generated by OMERO-python-superbuild-push#849 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/849/)

…ssl (See ome#240))

Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see ome#289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' Generated by OMERO-python-superbuild-push#850 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/850/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (state: failure) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (state: failure) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (exclude comment) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see #289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (state: failure) Already up-to-date. Merged PRs: - PR 103 joshmoore 'Script for calculating min/max' - PR 173 will-moore 'ROI export with Well ID' Repository: ome/omero-web Excluded PRs: - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (exclude comment) - PR 224 manics 'WIP: Rewrite Dockerfile' (exclude comment) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (exclude comment) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (exclude comment) - PR 168 stick 'Changes to nginx @maintenance handler' (state: failure) - PR 142 manics 'omero.web.secure defaults to true' (state: failure) - PR 64 manics 'Remove omero_ext.argparse' (exclude comment) - PR 63 manics 'Web templating with Jinja 2' (state: failure) Already up-to-date. Merged PRs: - PR 225 will-moore 'Query string ids' - PR 308 kkoz 'Obj id bitmask endpoint' - PR 323 will-moore 'Filtering handles ampersands in image names' Conflicting PRs (not included): - PR 313 emilroz 'Add option to hide "Forgot Password"' Generated by OMERO-python-superbuild-push#850 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/850/)

Repository: ome/omero-py Excluded PRs: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see ome#289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#722 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/722/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (user: joshmoore) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (user: will-moore) - PR 34 chris-allan 'Initial support for Event' (user: chris-allan) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (user: chris-allan) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (user: chris-allan) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see #289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (user: jburel) - PR 173 will-moore 'ROI export with Well ID' (user: will-moore) - PR 103 joshmoore 'Script for calculating min/max' (user: joshmoore) Already up-to-date. Repository: ome/omero-web Excluded PRs: - PR 323 will-moore 'Filtering handles ampersands in image names' (user: will-moore) - PR 313 emilroz 'Add option to hide "Forgot Password"' (user: emilroz) - PR 308 kkoz 'Obj id bitmask endpoint' (user: kkoz) - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (user: manics) - PR 225 will-moore 'Query string ids' (user: will-moore) - PR 224 manics 'WIP: Rewrite Dockerfile' (user: manics) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (user: bramalingam) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (user: manics) - PR 168 stick 'Changes to nginx @maintenance handler' (user: stick) - PR 142 manics 'omero.web.secure defaults to true' (user: manics) - PR 64 manics 'Remove omero_ext.argparse' (user: manics) - PR 63 manics 'Web templating with Jinja 2' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#722 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/722/)

…ssl (See ome#240))

Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see ome#289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' Generated by OMERO-python-superbuild-push#851 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/851/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (state: failure) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (state: failure) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (exclude comment) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see #289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (state: failure) Already up-to-date. Merged PRs: - PR 103 joshmoore 'Script for calculating min/max' - PR 173 will-moore 'ROI export with Well ID' Repository: ome/omero-web Excluded PRs: - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (exclude comment) - PR 224 manics 'WIP: Rewrite Dockerfile' (exclude comment) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (exclude comment) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (exclude comment) - PR 168 stick 'Changes to nginx @maintenance handler' (state: failure) - PR 142 manics 'omero.web.secure defaults to true' (state: failure) - PR 64 manics 'Remove omero_ext.argparse' (exclude comment) - PR 63 manics 'Web templating with Jinja 2' (state: failure) Already up-to-date. Merged PRs: - PR 225 will-moore 'Query string ids' - PR 308 kkoz 'Obj id bitmask endpoint' - PR 323 will-moore 'Filtering handles ampersands in image names' Conflicting PRs (not included): - PR 313 emilroz 'Add option to hide "Forgot Password"' Generated by OMERO-python-superbuild-push#851 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/851/)

Repository: ome/omero-py Excluded PRs: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see ome#289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#723 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/723/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (user: joshmoore) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (user: will-moore) - PR 34 chris-allan 'Initial support for Event' (user: chris-allan) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (user: chris-allan) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (user: chris-allan) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see #289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (user: jburel) - PR 173 will-moore 'ROI export with Well ID' (user: will-moore) - PR 103 joshmoore 'Script for calculating min/max' (user: joshmoore) Already up-to-date. Repository: ome/omero-web Excluded PRs: - PR 323 will-moore 'Filtering handles ampersands in image names' (user: will-moore) - PR 313 emilroz 'Add option to hide "Forgot Password"' (user: emilroz) - PR 308 kkoz 'Obj id bitmask endpoint' (user: kkoz) - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (user: manics) - PR 225 will-moore 'Query string ids' (user: will-moore) - PR 224 manics 'WIP: Rewrite Dockerfile' (user: manics) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (user: bramalingam) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (user: manics) - PR 168 stick 'Changes to nginx @maintenance handler' (user: stick) - PR 142 manics 'omero.web.secure defaults to true' (user: manics) - PR 64 manics 'Remove omero_ext.argparse' (user: manics) - PR 63 manics 'Web templating with Jinja 2' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#723 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/723/)

…ssl (See ome#240))

Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see ome#289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' Generated by OMERO-python-superbuild-push#852 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/852/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (state: failure) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (state: failure) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (exclude comment) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see #289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (state: failure) Already up-to-date. Merged PRs: - PR 103 joshmoore 'Script for calculating min/max' - PR 173 will-moore 'ROI export with Well ID' Repository: ome/omero-web Excluded PRs: - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (exclude comment) - PR 224 manics 'WIP: Rewrite Dockerfile' (exclude comment) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (exclude comment) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (exclude comment) - PR 168 stick 'Changes to nginx @maintenance handler' (state: failure) - PR 142 manics 'omero.web.secure defaults to true' (state: failure) - PR 64 manics 'Remove omero_ext.argparse' (exclude comment) - PR 63 manics 'Web templating with Jinja 2' (state: failure) Already up-to-date. Merged PRs: - PR 225 will-moore 'Query string ids' - PR 308 kkoz 'Obj id bitmask endpoint' - PR 323 will-moore 'Filtering handles ampersands in image names' Conflicting PRs (not included): - PR 313 emilroz 'Add option to hide "Forgot Password"' Generated by OMERO-python-superbuild-push#852 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/852/)

Repository: ome/omero-py Excluded PRs: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see ome#289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#724 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/724/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (user: joshmoore) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (user: will-moore) - PR 34 chris-allan 'Initial support for Event' (user: chris-allan) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (user: chris-allan) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (user: chris-allan) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' (user: chris-allan) - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see #289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Already up-to-date. Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (user: jburel) - PR 173 will-moore 'ROI export with Well ID' (user: will-moore) - PR 103 joshmoore 'Script for calculating min/max' (user: joshmoore) Already up-to-date. Repository: ome/omero-web Excluded PRs: - PR 323 will-moore 'Filtering handles ampersands in image names' (user: will-moore) - PR 313 emilroz 'Add option to hide "Forgot Password"' (user: emilroz) - PR 308 kkoz 'Obj id bitmask endpoint' (user: kkoz) - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (user: manics) - PR 225 will-moore 'Query string ids' (user: will-moore) - PR 224 manics 'WIP: Rewrite Dockerfile' (user: manics) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (user: bramalingam) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (user: manics) - PR 168 stick 'Changes to nginx @maintenance handler' (user: stick) - PR 142 manics 'omero.web.secure defaults to true' (user: manics) - PR 64 manics 'Remove omero_ext.argparse' (user: manics) - PR 63 manics 'Web templating with Jinja 2' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#724 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/724/)

…ssl (See ome#240))

Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see ome#289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' Generated by OMERO-python-superbuild-push#853 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/853/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (state: failure) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (state: failure) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (exclude comment) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Already up-to-date. Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see #289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (state: failure) Already up-to-date. Merged PRs: - PR 103 joshmoore 'Script for calculating min/max' - PR 173 will-moore 'ROI export with Well ID' Repository: ome/omero-web Excluded PRs: - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (exclude comment) - PR 224 manics 'WIP: Rewrite Dockerfile' (exclude comment) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (exclude comment) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (exclude comment) - PR 168 stick 'Changes to nginx @maintenance handler' (state: failure) - PR 142 manics 'omero.web.secure defaults to true' (state: failure) - PR 64 manics 'Remove omero_ext.argparse' (exclude comment) - PR 63 manics 'Web templating with Jinja 2' (state: failure) Already up-to-date. Merged PRs: - PR 225 will-moore 'Query string ids' - PR 308 kkoz 'Obj id bitmask endpoint' - PR 323 will-moore 'Filtering handles ampersands in image names' Conflicting PRs (not included): - PR 313 emilroz 'Add option to hide "Forgot Password"' Generated by OMERO-python-superbuild-push#853 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/853/)

Ensure we are using pyopenssl (See #240)

Repository: ome/omero-py Excluded PRs: - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see ome#289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Updating 4fa5ccb..f290057 Previously merged: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' Generated by OMERO-python-superbuild-push#725 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/725/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (user: joshmoore) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (user: will-moore) - PR 34 chris-allan 'Initial support for Event' (user: chris-allan) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (user: chris-allan) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (user: chris-allan) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 304 jburel 'Trigger pr' (user: jburel) - PR 303 joshmoore 'import --fetch-jars: allow direct link' (user: joshmoore) - PR 299 joshmoore 'Add parents and children to omero obj' (user: joshmoore) - PR 290 glyg 'Assert connection decorator, see #289' (user: glyg) - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' (user: sbesson) - PR 266 joshmoore 'errors: use raise_error from cli plugins' (user: joshmoore) - PR 207 manics 'BlitzGateway.connect raise on error' (user: manics) - PR 199 joshmoore 'user: allow setting default group' (user: joshmoore) - PR 194 manics 'Support Python 3 asyncio concurrency' (user: manics) - PR 184 manics 'Auto-format code with black' (user: manics) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (user: manics) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (user: dominikl) - PR 115 manics 'Remove omero_ext.argparse' (user: manics) Updating 4fa5ccb..f290057 Previously merged: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (user: jburel) - PR 173 will-moore 'ROI export with Well ID' (user: will-moore) - PR 103 joshmoore 'Script for calculating min/max' (user: joshmoore) Already up-to-date. Repository: ome/omero-web Excluded PRs: - PR 325 will-moore 'Fix change of dict size during iteration' (user: will-moore) - PR 323 will-moore 'Filtering handles ampersands in image names' (user: will-moore) - PR 313 emilroz 'Add option to hide "Forgot Password"' (user: emilroz) - PR 308 kkoz 'Obj id bitmask endpoint' (user: kkoz) - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (user: manics) - PR 225 will-moore 'Query string ids' (user: will-moore) - PR 224 manics 'WIP: Rewrite Dockerfile' (user: manics) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (user: bramalingam) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (user: manics) - PR 168 stick 'Changes to nginx @maintenance handler' (user: stick) - PR 142 manics 'omero.web.secure defaults to true' (user: manics) - PR 64 manics 'Remove omero_ext.argparse' (user: manics) - PR 63 manics 'Web templating with Jinja 2' (user: manics) Already up-to-date. Generated by OMERO-python-superbuild-push#725 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/725/)

Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Updating 4fa5ccb..f290057 Previously merged: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome#240)' Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see ome#289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' Generated by OMERO-python-superbuild-push#854 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/854/)

Repository: ome/omero-python-superbuild Already up-to-date. Repository: ome/omero-dropbox Excluded PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' (state: failure) Already up-to-date. Repository: ome/omero-marshal Excluded PRs: - PR 69 will-moore 'Roi encoder allows Shape None' (state: failure) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) - PR 29 chris-allan 'Initial support for FileAnnotation and OriginalFile' (exclude comment) Already up-to-date. Repository: ome/omero-py Excluded PRs: - PR 184 manics 'Auto-format code with black' (exclude comment) - PR 160 manics 'prefs.py: config throw if OMERODIR not set' (exclude comment) - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment) - PR 115 manics 'Remove omero_ext.argparse' (exclude comment) Updating 4fa5ccb..f290057 Previously merged: - PR 305 chris-allan 'Ensure we are using pyopenssl (See ome/omero-py#240)' Merged PRs: - PR 194 manics 'Support Python 3 asyncio concurrency' - PR 199 joshmoore 'user: allow setting default group' - PR 207 manics 'BlitzGateway.connect raise on error' - PR 266 joshmoore 'errors: use raise_error from cli plugins' - PR 287 sbesson 'Add logic to search OMERO.tables on non Pythonic named columns' - PR 290 glyg 'Assert connection decorator, see #289' - PR 299 joshmoore 'Add parents and children to omero obj' - PR 303 joshmoore 'import --fetch-jars: allow direct link' - PR 304 jburel 'Trigger pr' Repository: ome/omero-scripts Excluded PRs: - PR 187 jburel 'Rtd' (state: failure) Already up-to-date. Merged PRs: - PR 103 joshmoore 'Script for calculating min/max' - PR 173 will-moore 'ROI export with Well ID' Repository: ome/omero-web Excluded PRs: - PR 226 manics 'WIP: Prettier autoformat (js, css, md)' (exclude comment) - PR 224 manics 'WIP: Rewrite Dockerfile' (exclude comment) - PR 200 bramalingam 'WIP:Django upgrade to 2.2' (exclude comment) - PR 196 manics 'OMERO.web default log can be changed, e.g. to stdout' (exclude comment) - PR 168 stick 'Changes to nginx @maintenance handler' (state: failure) - PR 142 manics 'omero.web.secure defaults to true' (state: failure) - PR 64 manics 'Remove omero_ext.argparse' (exclude comment) - PR 63 manics 'Web templating with Jinja 2' (state: failure) Already up-to-date. Merged PRs: - PR 225 will-moore 'Query string ids' - PR 308 kkoz 'Obj id bitmask endpoint' - PR 323 will-moore 'Filtering handles ampersands in image names' - PR 325 will-moore 'Fix change of dict size during iteration' Conflicting PRs (not included): - PR 313 emilroz 'Add option to hide "Forgot Password"' Generated by OMERO-python-superbuild-push#854 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/854/)

chris-allan added 5 commits August 4, 2020 14:48

Add requests dependency

6e86e34

Use requests for upgrade check

192b43a

Fix flake8 errors

5ae046a

Use requests for OMERO Java download

c889c49

Fix flake8 errors

573bda8

chris-allan requested review from manics, mtbc and joshmoore August 4, 2020 13:57

manics reviewed Aug 4, 2020

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This was referenced Aug 5, 2020

Replace ~/omero with standard OS-dependent paths #233

Closed

OMERO.py 5.8.0 updates ome/conda-omero-py#7

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manics reviewed Aug 5, 2020

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chris-allan added 2 commits August 5, 2020 11:01

Accurate timeout doc reference

16dd113

Result has already been decoded

4f8d9fb

Reword comment

0c01a0b

chris-allan closed this Aug 5, 2020

chris-allan reopened this Aug 5, 2020

manics approved these changes Aug 5, 2020

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jburel merged commit 81982aa into ome:master Aug 7, 2020

chris-allan mentioned this pull request Sep 29, 2021

Ensure we are using pyopenssl (See ome/omero-py#240) #305

Merged

snoopycrimecop added a commit to snoopycrimecop/omero-py that referenced this pull request Sep 30, 2021

merge master -Dorg -Ssuccess-only: PR 305 (Ensure we are using pyopen…

a7bb14a

…ssl (See ome#240))

snoopycrimecop added a commit to snoopycrimecop/omero-py that referenced this pull request Oct 13, 2021

merge master -Dorg -Ssuccess-only: PR 305 (Ensure we are using pyopen…

dca8c2b

…ssl (See ome#240))

snoopycrimecop added a commit to snoopycrimecop/omero-py that referenced this pull request Oct 13, 2021

merge master -Dorg -Ssuccess-only: PR 305 (Ensure we are using pyopen…

a7280c5

…ssl (See ome#240))

snoopycrimecop added a commit to snoopycrimecop/omero-py that referenced this pull request Oct 15, 2021

merge master -Dorg -Ssuccess-only: PR 305 (Ensure we are using pyopen…

d013ebb

…ssl (See ome#240))

snoopycrimecop added a commit to snoopycrimecop/omero-py that referenced this pull request Oct 16, 2021

merge master -Dorg -Ssuccess-only: PR 305 (Ensure we are using pyopen…

30ff80f

…ssl (See ome#240))

snoopycrimecop added a commit to snoopycrimecop/omero-py that referenced this pull request Oct 17, 2021

merge master -Dorg -Ssuccess-only: PR 305 (Ensure we are using pyopen…

7dd16af

…ssl (See ome#240))

snoopycrimecop added a commit to snoopycrimecop/omero-py that referenced this pull request Oct 18, 2021

merge master -Dorg -Ssuccess-only: PR 305 (Ensure we are using pyopen…

16b0503

…ssl (See ome#240))

joshmoore added a commit that referenced this pull request Oct 18, 2021

Merge pull request #305 from chris-allan/use-pyopenssl

f290057

Ensure we are using pyopenssl (See #240)

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Use requests for HTTP/HTTPS calls in library #240

Use requests for HTTP/HTTPS calls in library #240

chris-allan commented Aug 4, 2020

manics Aug 4, 2020

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jburel commented Aug 7, 2020

	#
	# Default timeout is 3 seconds.
	# * http://docs.python.org/2/library/socket.html#socket.setdefaulttimeout
	#

	>>> from omero.util.upgrade_check import UpgradeCheck
	>>> uc = UpgradeCheck("doctest")
	>>> uc.run()
	>>> uc.isUpgradeNeeded()
	False
	>>> uc.isExceptionThrown()
	False

	try:
	from urllib.parse import quote, unquote
	except ImportError:
	# Python2
	from urllib.parse import quote, unquote

Use requests for HTTP/HTTPS calls in library #240

Use requests for HTTP/HTTPS calls in library #240

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