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add non-additive stat summaries to dedup/stats: complexity estimation, cis/total, ... #54

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golobor opened this issue Oct 18, 2017 · 5 comments

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@golobor
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golobor commented Oct 18, 2017

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@golobor golobor changed the title add complexity estimation to dedup/stats add non-additive stat summaries to dedup/stats: complexity estimation, cis/total, ... Oct 19, 2017
@sergpolly sergpolly mentioned this issue Dec 22, 2017
@sergpolly
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if you guys can describe here what kind of stats do you want to be included - it would be easy to implement.

I know cis/total and trans/total, but what else ? formulas please?

Only merge is going to be "non-trivial", i.e. cis1/total1 and cis2/total2 != cis1+cis2/(total1+total2), not cis1/total1+cis2/total2

@sergpolly
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@golobor vvis'

@agalitsyna
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@Phlya What do you think about this suggestion?

@Phlya
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Phlya commented Apr 22, 2022

This is the suggestions I have been addressing in #105
It's nearly ready for the simple cases of cis/trans etc, but I haven't implemented the more robust complexity estimation that would estimate the PCR duplicates more accurately yet.

@agalitsyna
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Resolved in #105 and introduced to #117 as part of pre 1.0.0 updates

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