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Add support for CellML 2.0 #1703

Closed
10 of 17 tasks
agarny opened this issue Jun 22, 2018 · 1 comment
Closed
10 of 17 tasks

Add support for CellML 2.0 #1703

agarny opened this issue Jun 22, 2018 · 1 comment

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@agarny
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agarny commented Jun 22, 2018 •
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Things to be done:

  • Add a plugin for libCellML
  • CellML support:
    • Allow a CellML file to be a CellML 2.0 file
    • Recognise a CellML file as being a CellML 2.0 file (using libCellML)
  • SED-ML support: add support for CellML 2.0
  • COMBINE support: add support for CellML 2.0
  • CellML tools: export a CellML 1.0/1.1 file to CellML 2.0
    • from the GUI
    • from the CLI
  • CellML Annotation view: add support for CellML 2.0
  • CellML Text view: add support for CellML 2.0
  • Raw CellML view: add support for CellML 2.0
  • Simulation Experiment view: add support for CellML 2.0, i.e.
    • Add support for CellML 2.0 in the export of a simulation to a SED-ML file / COMBINE archive
    • Run a CellML 2.0 file

For the conversion from CellML 1.0/1.1 to CellML 2.0, we will want to use cellml1to2.xsl from the cellml/cellml1to2 repository.
@agarny agarny added the Feature label Jun 22, 2018
@agarny agarny added this to the 0.8 milestone Jun 22, 2018
@agarny agarny self-assigned this Jun 22, 2018
agarny added a commit to agarny/opencor that referenced this issue Jun 22, 2018
@agarny
CellML support: added preliminary support for CellML 2.0 (opencor#1703).
1f0e948
agarny added a commit to agarny/opencor that referenced this issue Jun 22, 2018
@agarny
SED-ML support: added support for CellML 2.0 (opencor#1703).
bc82467
agarny added a commit to agarny/opencor that referenced this issue Jun 22, 2018
@agarny
COMBINE support: added support for CellML 2.0 (opencor#1703).
bfa06e0
agarny added a commit to agarny/opencor that referenced this issue Jun 23, 2018
@agarny
Simulation Experiment view: added support for CellML 2.0 (opencor#1703).
ae565fe
agarny added a commit to agarny/opencor that referenced this issue Jun 23, 2018
@agarny
Some minor cleaning up (opencor#1703).
1dad216
agarny added a commit to agarny/opencor that referenced this issue Jun 23, 2018
@agarny
CellML support: can now retrieve the CellML version of some file cont…
e279076 
…ents (opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 23, 2018
@agarny
CellML Text view: make sure that it only works with CellML 1.0/1.1 fi…
ed06d9f 
…les (opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 23, 2018
@agarny
COMBINE support: added support for CellML 2.0 (opencor#1703).
74af8cc
agarny added a commit to agarny/opencor that referenced this issue Jun 24, 2018
@agarny
CellML support: some minor cleaning up (opencor#1703).
7331264
agarny added a commit to agarny/opencor that referenced this issue Jun 24, 2018
@agarny
CellML support: some minor cleaning up (opencor#1703).
46f5795
agarny added a commit to agarny/opencor that referenced this issue Jun 24, 2018
@agarny
CellML tools: some minor cleaning up (opencor#1703).
34b52ed
agarny added a commit to agarny/opencor that referenced this issue Jun 24, 2018
@agarny
CellML tools: some minor cleaning up (opencor#1703).
4cbeefe
agarny added a commit to agarny/opencor that referenced this issue Jun 25, 2018
@agarny
CellML tools: added a menu to export a CellML file to CellML 2.0 (ope…
6d146e4 
…ncor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 25, 2018
@agarny
CellML tools: added a menu to export a CellML file to CellML 2.0 (ope…
2b481bc 
…ncor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 25, 2018
@agarny
CellML support: can now convert a CellML 1.0/1.1 file to CellML 2.0 f…
ec36434 
…rom the GUI (opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 25, 2018
@agarny
CellML support: can now convert a CellML 1.0/1.1 file to CellML 2.0 f…
d4ae707 
…rom the GUI (opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 25, 2018
@agarny
CellML support: can now convert a CellML 1.0/1.1 file to CellML 2.0 f…
2b610c9 
…rom the CLI (opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 26, 2018
@agarny
CellML support: some minor cleaning up (opencor#1703).
15e2816
agarny added a commit to agarny/opencor that referenced this issue Jun 26, 2018
@agarny
CellML support: some minor cleaning up (opencor#1703).
13ff8ab
agarny added a commit to agarny/opencor that referenced this issue Jun 26, 2018
@agarny
CellML support: can now convert a CellML 1.0/1.1 file to CellML 2.0 f…
464cd45 
…rom the CLI (opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 26, 2018
@agarny
CellML support: can now convert a CellML 1.0/1.1 file to CellML 2.0 (o…
3bfd8cb 
…pencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 26, 2018
@agarny
CellML tools: some minor cleaning up (opencor#1703).
7a87663
@agarny agarny mentioned this issue Jun 26, 2018
Closed
7 tasks
agarny added a commit to agarny/opencor that referenced this issue Jun 28, 2018
@agarny
Added the libCellML plugin (opencor#1703).
733dbb5
agarny added a commit to agarny/opencor that referenced this issue Jun 28, 2018
@agarny
Only build the libCellML plugin (incl. tests) (opencor#1703).
852d1c1
agarny added a commit to agarny/opencor that referenced this issue Jun 28, 2018
@agarny
Added the libCellML plugin (opencor#1703).
11f7606
agarny added a commit to agarny/opencor that referenced this issue Jun 28, 2018
@agarny
Added the libCellML plugin (opencor#1703).
3e91ecc
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
Don't only build the libCellML plugin (incl. tests) (opencor#1703).
edee2f4
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
CellML support: can now recognise (and nothing more) a CellML 2.0 file (
f6f37be 
opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
CellML Annotation view: only support CellML 1.0/1.1 files (opencor#1703…
f5f4b03 
…).
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
Raw CellML view: only support CellML 1.0/1.1 files (opencor#1703).
7050bd9
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
Simulation Experiment view: only support CellML 1.0/1.1 files (openco…
4d1af2d 
…r#1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
libCellML plugin: handle the case where PASCAL is defined (opencor#…
4f7a2c8 
…1703).
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
CellML support: some minor cleaning up (opencor#1703).
477e4c8
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
Revert "libCellML plugin: handle the case where PASCAL is defined (o…
bf43cf0 
…pencor#1703)."

This reverts commit 4f7a2c8.
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
Only build the libCellML plugin (incl. tests) (opencor#1703).
b30b40c
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
libCellML package: new binaries (opencor#1703).
c948e79
agarny added a commit to agarny/opencor that referenced this issue Jun 29, 2018
@agarny
Don't only build the libCellML plugin (incl. tests) (opencor#1703).
eba9aba
@agarny agarny mentioned this issue Jul 5, 2018
Closed
agarny added a commit to agarny/opencor that referenced this issue Jul 5, 2018
@agarny
Only build the libCellML plugin (incl. tests) (opencor#1703).
f63039f
agarny added a commit to agarny/opencor that referenced this issue Jul 5, 2018
@agarny
libCellML package: new binaries (opencor#1703).
ce1e890
agarny added a commit to agarny/opencor that referenced this issue Jul 5, 2018
@agarny
Don't only build the libCellML plugin (incl. tests) (opencor#1703).
fae0361
@agarny agarny mentioned this issue Oct 17, 2018
Open
agarny added a commit to agarny/opencor that referenced this issue Jan 16, 2019
@agarny
libCellML: make sure that we can build a debug version on Linux and m…
d67b70b 
…acOS (opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Jan 16, 2019
@agarny
libCellML: new binaries (opencor#1703).
37487bd 
This version of libCellML checks that a CellML file is indeed in the
CellML 2.0 namespace.
agarny added a commit to agarny/opencor that referenced this issue Jan 16, 2019
@agarny
libCellML: new binaries (opencor#1703).
1f26ff3 
This version of libCellML checks that a CellML file is indeed in the
CellML 2.0 namespace.
agarny added a commit to agarny/opencor that referenced this issue Jan 16, 2019
@agarny
Revert "libCellML: make sure that we can build a debug version on Lin…
a7ab6c7 
…ux and macOS (opencor#1703)."

This reverts commit d67b70b.
agarny added a commit to agarny/opencor that referenced this issue Jan 16, 2019
@agarny
libCellML: make sure that we always build a release version on Linux …
7fe24c6 
…and macOS (opencor#1703).
agarny added a commit to agarny/opencor that referenced this issue Mar 14, 2019
@agarny
CellML support: addressed some QXmlQuery limitations (opencor#1703).
40c8949
agarny added a commit to agarny/opencor that referenced this issue Mar 15, 2019
@agarny
CellML support: addressed some QXmlQuery limitations (opencor#1703).
1f8a5f3
agarny added a commit to agarny/opencor that referenced this issue Mar 15, 2019
@agarny
CellML support: addressed some QXmlQuery limitations (opencor#1703).
98865b6
agarny added a commit to agarny/opencor that referenced this issue Jan 7, 2020
@agarny
CellML support: updated our libCellML-related code (opencor#1703).
76a3647
@agarny
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agarny commented Feb 7, 2024

We are moving OpenCOR to the Web/Electron, so support for CellML 2.0 will be done there, hence closing.

@agarny agarny closed this as completed Feb 7, 2024
@agarny agarny removed their assignment Feb 7, 2024
@agarny agarny removed the Feature label Feb 7, 2024
@agarny agarny removed this from the 0.8 milestone Feb 7, 2024
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