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Run this command in orbisgis-dist project:
mvn clean install exec:exec -Dexec.args="-classpath %classpath -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=6666 org.orbisgis.framework.Main --nofailmode"
In NetBeans attach to the debug server you just started:
Load your plugin in OrbisGIS (from your target folder). You will be able to set breakpoint in NetBeans and debug line by line.