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@AgPipeline Agricultural Data Processing Pipeline

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    41 repositories

    • agpypeline

      Public
      Python library of common classes and functions
      pythonlibrarydrone
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•1•Updated Jul 15, 2024Jul 15, 2024

    • transformer-soilmask

      Public
      Masks soil from images (formerly extractor-stereo-rgb/rgbmask in TERRAREF project)
      droneplants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•5•0•0•Updated Feb 7, 2023Feb 7, 2023

    • drone-makeflow

      Public
      Makeflow files for running drone workflows
      workflowdronemakeflow
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•0•0•Updated Jan 30, 2023Jan 30, 2023

    • transformer-opendronemap

      Public
      Transformer for OpenDroneMap functionality
      drone
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Dec 2, 2022Dec 2, 2022

    • template-transformer-simple

      Public template
      A template for creating transformers for multiple environments
      drone
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Nov 28, 2022Nov 28, 2022

    • plot-base-rgb

      Public
      Base code for RGB template support providing Transformer functionality
      droneplotplants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 28, 2022Nov 28, 2022

    • transformer-soilmask-by-ratio

      Public
      Masks soil from images using a Green-to-Red ratio comparison for each pixel
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 28, 2022Nov 28, 2022

    • transformer-plotclip

      Public
      Clips files to plot boundaries (based upon TERRA REF computing-pipeline/extractors/plotclipper)
      droneplots
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Nov 28, 2022Nov 28, 2022

    • transformer-canopycover

      Public
      Calculates canopy cover on soil masked images (based upon TERRA REF extractors-stereo-rgb/canopycover)
      droneplants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•1•0•0•Updated Nov 28, 2022Nov 28, 2022

    • Atlana

      Public
      Web UI for AgPipeline workflows
      websiteworkflowdrone
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • Organization-info

      Public
      Information on how to contribute this GitHub organization and related documents
      0•3•0•0•Updated Sep 21, 2022Sep 21, 2022

    • template-rgb-plot

      Public template
      Transformer template for plot level RGB data analysis. Please read HOW_TO.md to start
      processingdockertemplatedockerfileautomationdroneagriculturedistributed-computingimage-processingrgb
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•0•2•Updated Dec 20, 2021Dec 20, 2021

    • Paper-data

      Public
      Contains the instructions and scripts on how to reproduce the results found in the Drone Processing Pipeline paper
      processingdatareproduce
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 14, 2021Sep 14, 2021

    • transformer-rgb-indices

      Public
      Contains rgb data transformers + greenness calculations
      drone
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•0•0•Updated Sep 13, 2021Sep 13, 2021

    • issues-and-projects

      Public
      Repository for issues and projects
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•3•82•0•Updated Apr 8, 2021Apr 8, 2021

    • rstudio-FIELDimageR

      Public
      FIELDimageR Dockerfile for the CyVerse VICE environment
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Feb 25, 2021Feb 25, 2021

    • AgPipeline.github.io

      Public
      Web site for GitHub related information for this organization
      documentationtechnicalguide
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Feb 23, 2021Feb 23, 2021

    • .github

      Public
      repository for default community health files
      2•0•0•0•Updated Feb 23, 2021Feb 23, 2021

    • drone-pipeline-environment

      Public archive
      Implements Transformer class and provides docker images for the drone processing pipeline
      drone
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•9•0•Updated Jul 16, 2020Jul 16, 2020

    • data

      Public
      Issues and code specifically related to data curation and use
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Jun 9, 2020Jun 9, 2020

    • deprecated-base-docker-support

      Public
      Implements Entry Point and provides a base docker image with transformer execution flow
      dronegantryterra-ref
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 5, 2020Jun 5, 2020

    • transformer-betydb-csvupload

      Public
      Uploads CSV files to a BETYdb instance (based upon TERRA REF computing-pipeline/extractors/betydb)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated May 20, 2020May 20, 2020

    • transformer-rgb_quality

      Public
      Creates a quality measure on RGB images (based upon TERRA REF quality-metrics/rgb_qc)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated May 20, 2020May 20, 2020

    • transformer-geostream-csvupload

      Public
      Loads CSV files to GeoStreams database instance (base upon TERRA REF computing-pipeline/extractors/geostreams)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated May 20, 2020May 20, 2020

    • transformer-fieldmosaic

      Public archive
      Moving to https:/github.com/uacic. Creates an RGB field mosaic with Gantry images (formerly TERRA REF extractors-stereo-rgb/fieldmosaic)
      gantryterra-ref
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated May 6, 2020May 6, 2020

    • transformer-psii2png

      Public archive
      Moving to https:/github.com/uacic. Converts PSII sensor files to PNG (based upon TERRA REF extractors-multispectral/psii2png)
      gantryterra-ref
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Apr 23, 2020Apr 23, 2020

    • ua-gantry-environment

      Public archive
      Moving to https:/github.com/uacic. Implements Transformer class and provides docker images for University of Arizona transformers for Common Workflow Language environment
      gantryterra-ref
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Apr 6, 2020Apr 6, 2020

    • transformer-ply2las

      Public archive
      Moving to https:/github.com/uacic. Converts PLY point clouds to LAS (formerly extractors-3dscanner/ply2las in TERRAREF project)
      gantryterra-ref
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Apr 1, 2020Apr 1, 2020

    • alpha-template-lidar-plot

      Public template
      Transformer template for plot level lidar data analysis. Please read HOW_TO.md to start
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Feb 19, 2020Feb 19, 2020

    • transformer-flir2tif

      Public archive
      Moving to https:/github.com/uacic. Converts the IR bin files to geo-referenced TIF (based upon TERRA REFextractors-multispectral/flir2tif)
      gantryterra-ref
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Feb 13, 2020Feb 13, 2020