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@CAAI Clinically Applied Artificial Intelligence

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    22 repositories

    • rh-library

      Public
      A collection of deployment ready machine learning tools developed by CAAI. Each model is packaged in rh-node to enable easy deployment with docker
      Python
      •0•1•2•0•Updated Nov 13, 2024Nov 13, 2024

    • rh-scripts

      Public
      Python
      •1•1•1•0•Updated Oct 31, 2024Oct 31, 2024

    • rh-report

      Public
      Lightweight PDF report generation
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • rh-queue

      Public
      Python
      •1•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • rh-node

      Public
      rh-node
      Python
      •0•0•4•1•Updated Sep 13, 2024Sep 13, 2024

    • DeepMRAC

      Public
      Deep learning based peudoCT generation from MRI
      Python
      •0•6•1•0•Updated May 22, 2024May 22, 2024

    • PE2I_denoiser

      Public
      Denoises PE2I lowdose PET data
      Python
      •1•1•0•0•Updated Sep 25, 2023Sep 25, 2023

    • AIMS

      Public
      Automatic MS lesion delineation model. nnU-Net trained on 549 clinical patientients
      Python
      •0•1•0•0•Updated Sep 1, 2023Sep 1, 2023

    • zerodose

      Public
      zerodose
      Python
      •
      MIT License
      •0•6•0•9•Updated Aug 21, 2023Aug 21, 2023

    • amyloidAI

      Public
      Estimation of brain amyloid accumulation using deep learning in clinical [11C]PiB PET imaging
      Python
      •1•1•0•0•Updated Jul 14, 2023Jul 14, 2023

    • brainPETNR

      Public
      Code used in relation to the neurodegenerative disorder study with [11C]PiB and [18F]FE-PE2I tracers (2022). Image preparation, model inference and metrics extraction.
      denoising-autoencoderspositron-emission-tomographyunet-modelbrain-scans
      Python
      •0•3•0•0•Updated Jun 22, 2023Jun 22, 2023

    • rh-torch

      Public
      Shared scripts for training deep learning networks in torch
      Python
      •1•0•1•0•Updated Jun 20, 2023Jun 20, 2023

    • HD-CTBET

      Public
      MRI brain extraction tool
      Python
      •
      Apache License 2.0
      •67•4•0•0•Updated Jun 8, 2023Jun 8, 2023

    • hnc-tumour-seg

      Public
      Clinical evaluation of deep learning for tumour delineation on [18F]FDG-PET/CT of head and neck cancer
      pet-cthead-and-neck-cancertumour-delineationdeep-learning
      Jupyter Notebook
      •
      Apache License 2.0
      •2•5•0•0•Updated Jun 7, 2023Jun 7, 2023

    • auto_tumour_seg

      Public
      Clinical evaluation of deep learning for tumour delineation on [18F]FDG-PET/CT of head and neck cancer
      learningdeep
      Apache License 2.0
      •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022

    • deepmedic_DGK

      Public
      Deep medic adapted to be used with PET-CT segmentation tasks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 16, 2022Aug 16, 2022

    • tureckova-DGK

      Public
      My adaptation of Tureckova's attention-gated nnUNet method to work with PET-CT data.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Aug 16, 2022Aug 16, 2022

    • nnUNet-DGK

      Public
      My additions and changes to nnUNet (my changes were eventually unused - this is mostly uploaded to document version I used)
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 16, 2022Aug 16, 2022

    • SwinUNETR-DGK

      Public
      Adapted from https://github.com/Project-MONAI/research-contributions/tree/main/SwinUNETR/BTCV
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 16, 2022Aug 16, 2022

    • InnerEye-DeepLearning-DGK

      Public
      Adapted from https://github.com/microsoft/InnerEye-DeepLearning
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 10, 2022Aug 10, 2022

    • mr-check

      Public
      TypeScript
      •0•0•0•0•Updated Apr 27, 2021Apr 27, 2021

    • CNN

      Public
      Python
      •1•0•0•2•Updated May 28, 2020May 28, 2020