UCSC Cancer Research

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22 repositories

samtools-pileup-tool
Public
Python
•6•0•0•0•Updated Nov 5, 2018Nov 5, 2018
radia-tool
Public
Python
•3•0•0•0•Updated Mar 12, 2018Mar 12, 2018
somaticsniper-tool
Public
Python
•6•0•0•0•Updated Mar 2, 2017Mar 2, 2017
fpfilter-tool
Public
Perl
•21•5•4•0•Updated Nov 30, 2016Nov 30, 2016
genetorrent-tool
Public
Python
•3•0•0•0•Updated Oct 4, 2016Oct 4, 2016
pindel-tool
Public
Python
•8•1•0•0•Updated Mar 29, 2016Mar 29, 2016
pcawg_tools
Public
Python
•9•4•0•0•Updated Mar 25, 2016Mar 25, 2016
varscan-tool
Public
Python
•5•0•0•0•Updated Mar 16, 2016Mar 16, 2016
muse-tool
Public
Python
•7•0•1•0•Updated Mar 15, 2016Mar 15, 2016
gatk-cocleaning-tool
Public
Python
•6•1•0•0•Updated Dec 12, 2015Dec 12, 2015
icgc_rnaseq_align
Public
Python
•17•4•0•1•Updated Sep 28, 2015Sep 28, 2015
tcgavcf-tool
Public
Python
•7•0•1•0•Updated Sep 24, 2015Sep 24, 2015
icgc-pcap-tools
Public
Python
•0•0•0•0•Updated Jul 22, 2015Jul 22, 2015
broad-variant-pipeline-tool
Public
Shell
•1•0•0•0•Updated Jul 13, 2015Jul 13, 2015
radia
Public
RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection
Python
•
GNU Affero General Public License v3.0
•11•0•0•0•Updated Jul 6, 2015Jul 6, 2015
pathway_tools
Public
Tools for working with UCSC super pathway
Python
•6•10•1•1•Updated May 19, 2015May 19, 2015
smc_het_example
Public
R
•1•0•0•0•Updated Apr 14, 2015Apr 14, 2015
pathmark-scripts
Public
JavaScript
•3•1•0•0•Updated Feb 19, 2015Feb 19, 2015
paradigm-scripts
Public
Python
•11•7•0•0•Updated Feb 17, 2015Feb 17, 2015
superpathway_db
Public
The UCSC SuperPathway
3•3•5•0•Updated Jul 23, 2014Jul 23, 2014
cgData
Public
Python API to work with the cgData standard
Python
•8•8•0•0•Updated Apr 2, 2013Apr 2, 2013
cgDataV2
Public
Version 2 of the cgData API
Python
•0•1•0•0•Updated Jul 31, 2012Jul 31, 2012