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Error when the specified bucket for output does not exist #27

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friend1ws opened this issue Feb 5, 2018 · 3 comments
Open

Error when the specified bucket for output does not exist #27

friend1ws opened this issue Feb 5, 2018 · 3 comments
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@otiai10
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@friend1ws
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friend1ws commented Feb 5, 2018 •
edited by otiai10
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upload failed: tmp/test180204/star/Hela_wt_dox-/Hela_wt_dox-.Chimeric.out.sam to s3://awsub-test-friend1ws2/test180204/star/Hela_wt_dox-/Hela_wt_dox-.Chimeric.out.sam An error occurred (NoSuchBucket) when calling the PutObject operation: The specified bucket does not exist
[star-alignment-task00] [FINALIZE] Successfully uploaded: s3://awsub-test-friend1ws2/test180204/star/Hela_wt_dox-

I think we have 2 options.

  1. First we check whether all the specified buckets in the output parameters exist or not. If some of the bucket do not exists, exit before downloading the input file with loggings.
  2. At the stage of uploading, check whether the specified buckets exist or not and create them if not.
@otiai10
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otiai10 commented Feb 5, 2018

Does it happen with v0.0.5?

@friend1ws
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Yes.

[star-alignment-task02] [FINALIZE] &2> upload failed: tmp/awsub-test-friend1ws22/test180205/star/MCF-7/MCF-7.Chimeric.out.junction to s3://awsub-test-friend1ws22/test180205/star/MCF-7/MCF-7.Chimeric.out.junction An error occurred (NoSuchBucket) when calling the PutObject operation: The specified bucket does not exist

@otiai10 otiai10 changed the title Error when the specified bucket does not exist Error when the specified bucket for output does not exist Feb 6, 2018
@otiai10 otiai10 mentioned this issue Feb 9, 2018
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@otiai10 otiai10 self-assigned this Feb 9, 2018
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otiai10 commented Feb 27, 2018

going with 1

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