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databases for GRN inference #5

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davidrm-bio opened this issue Feb 8, 2024 · 2 comments
Closed

databases for GRN inference #5

davidrm-bio opened this issue Feb 8, 2024 · 2 comments

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@davidrm-bio
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Hi,
Thank you for this cool tool. I manage to follow the tutorial until the inference of the GRN.

Before running the function for this, we download data using sn.download_db(). However, I get HTTP Error 404. I tried checking manually the URL from the script but I get that the website is no longer available. I am not quite sure which files and versions this link included. Could you provide a new link or information on which files I need ?

@Leslie456456
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I also encountered the same issue!

@oubounyt
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Owner

I've identified the issue and am working on resolving it. In the meantime, here are the new links to download the human and mouse datasets:

Human Dataset: https://cloud.uni-hamburg.de/s/YCJkWqebaP5poLH
Mouse Dataset: https://cloud.uni-hamburg.de/s/8ndzG5fm77e6dPG

I will also include these updated links in the upcoming version. If you encounter any further issues or have additional questions, please don't hesitate to reach out.

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