-
Notifications
You must be signed in to change notification settings - Fork 0
Home
Support, feedback or questions to patrick@ufpa.br
Version 1.0 (Mar 15, 2017) Copyright (c) 2017 By Patrick Douglas email: patrick@ufpa.br Seqs-Extractor home page: https://seqs-extractor.sourceforge.io
A simple tool to help extraction of:
-
BLASTed sequences using the tabular BLAST file and query sequences, producing a .FASTA file containing only sequences that matched with a specific percentage defined by the user. This software also turns BLAST command line more friendly.
-
Sequences containing microssatellites of a MISA file, producing a .FASTA file with only the sequences that contain the microssatellites. Seqs-Extractor allows you to run a MISA search and after extract the sequences, or just to extract the sequences from a MISA file already generated.
-
Sequences from any .FASTA file through a text file containing the IDs of the target sequences.
It works with shell bash. Seqs-Extractor is developed for Linux, it should also work with any UNIX operating system with Debian based and was tested under Linux Mint 17.3 xfce and Ubuntu 16.4 LTs.
Click here to download the latest version of Seqs-Extractor
- Home
- How to install
- How to run
- BLAST+ in Seqs-Extractor
- SSR analysis using Seqs-Extractor and MISA
- Extracting sequences from any .FASTA file using any TEXT file
- Extracting Trinity Differential Expression transcripts
- Example files of SeqsExtractor
- Frequent asked questions (FAQ) and known bugs
- Third party software that comes with Seqs Extractor
- References
- [DEPRECATED Options]