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i'm seeing multiple messages like this during Taxonomy step
print() on closed filehandle TMPOUT at /path/to/annotater/Reann.pm line 275, <IN> line 17
which is followed by this exception:
------------- EXCEPTION ------------- MSG: Could not read file '~/path/to/viral.1.1.genomic.fna.gis.txt.fa': No such file or directory STACK Bio::Root::IO::_initialize_io /path/to/bioperl/bioperl-live/Bio/Root/IO.pm:268 STACK Bio::SeqIO::_initialize /path/to/bioperl/bioperl-live/Bio/SeqIO.pm:513 STACK Bio::SeqIO::fasta::_initialize /path/to/bioperl/bioperl-live/Bio/SeqIO/fasta.pm:87 STACK Bio::SeqIO::new /path/to/bioperl/bioperl-live/Bio/SeqIO.pm:389 STACK Bio::SeqIO::new /path/to/bioperl/bioperl-live/Bio/SeqIO.pm:435 STACK Reann::Taxonomy /path/to/annotater/Reann.pm:282 STACK toplevel /path/to/annotater/Reann.pl:17 -------------------------------------
The text was updated successfully, but these errors were encountered:
This happens when using a tilde for user home directory in config file for path to blast database. Example:
~/path/to/viral.1.1.genomic.fna
Sorry, something went wrong.
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i'm seeing multiple messages like this during Taxonomy step
which is followed by this exception:
The text was updated successfully, but these errors were encountered: