update gitignore, add previously ignored example files

pepkit · May 7, 2019 · dc1b5f8 · dc1b5f8
1 parent b801a04
commit dc1b5f8
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Showing 3 changed files with 12 additions and 1 deletion.
diff --git a/.gitignore b/.gitignore
@@ -7,7 +7,6 @@ __pycache__
 tests/test/*
 
 # toy/experimental files
-*.csv
 *.tsv
 *.pkl
 

diff --git a/caravel/examples/count_reads/metadata/microtest_annotation.csv b/caravel/examples/count_reads/metadata/microtest_annotation.csv
@@ -0,0 +1,9 @@
+sample_name,protocol,filename,data_source,read_type
+ATAC-seq_human_PE,ATAC-seq,atac-seq_PE.bam,microtest,paired
+ATAC-seq_human_SE,ATAC-seq,atac-seq_SE.bam,microtest,single
+ChIP-seq_human_CTCF_PE,ChIP-seq,chip-seq_PE.bam,microtest,paired
+ChIP-seq_human_CTCF_SE,ChIP-seq,chip-seq_SE.bam,microtest,single
+ChIP-seq_human_H3K27ac_PE,ChIP-seq,chip-seq_PE.bam,microtest,paired
+ChIP-seq_human_H3K27ac_SE,ChIP-seq,chip-seq_SE.bam,microtest,single
+ChIPmentation_human_CTCF_PE,ChIPmentation,chipmentation_PE.bam,microtest,paired
+ChIPmentation_human_CTCF_SE,ChIPmentation,chipmentation_SE.bam,microtest,single
diff --git a/caravel/examples/count_reads/metadata/microtest_annotation_atac.csv b/caravel/examples/count_reads/metadata/microtest_annotation_atac.csv
@@ -0,0 +1,3 @@
+sample_name,protocol,filename,data_source,read_type
+ATAC-seq_human_PE,ATAC-seq,atac-seq_PE.bam,microtest,paired
+ATAC-seq_human_SE,ATAC-seq,atac-seq_SE.bam,microtest,single