Revert "Implement implied columns"

This reverts commit 6f0df60.

looper/models.py

@@ -1249,21 +1249,6 @@ def set_file_paths(self, override=False):
                     setattr(self, col, self.locate_data_source(col))
                     self.derived_cols_done.append(col)
 
-        if hasattr(self.prj, "implied_columns"):
-            _LOGGER.debug(self.prj["implied_columns"])
-            for base_col in self.prj["implied_columns"]:
-                try:
-                    base_col_value = self[base_col]
-                    _LOGGER.debug(self.prj["implied_columns"][base_col][self[base_col]])
-                    for new_col in self.prj["implied_columns"][base_col][self[base_col]].keys():
-                        val_to_append = self.prj["implied_columns"][base_col][self[base_col]][new_col]
-                        _LOGGER.debug(new_col)
-
-                        setattr(self, new_col, val_to_append)
-                except KeyError:  # that value was not mapped
-                    value_to_append = None
-
-
         # parent
         self.results_subdir = self.prj.metadata.results_subdir
         self.paths.sample_root = _os.path.join(self.prj.metadata.results_subdir, self.sample_name)

tests/conftest.py

@@ -38,14 +38,6 @@
   src1: "{basedir}/data/{sample_name}{col_modifier}.txt"
   src3: "{basedir}/data/{sample_name}.txt"
   src2: "{basedir}/data/{sample_name}-bamfile.bam"
-
-implied_columns:
-  sample_name:
-    a:
-      genome: hg38
-      phenome: hg72
-    b:
-      genome: hg38
 """.splitlines(True)
 # Will populate the corresponding string format entry in project config lines.
 DERIVED_COLNAMES = ["file", "file2", "dcol1", "dcol2",

tests/interactive.py

@@ -6,8 +6,7 @@
 
 from __future__ import absolute_import
 import looper
-#from . import conftest
-import conftest
+from . import conftest
 
 print("Running interactive.py tests")
 proj, pi = conftest.interactive()