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nsheff committed Jun 23, 2017
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Expand Up @@ -124,7 +124,7 @@ Example:
"--flag": null
For flag-like options (options without parameters), you should the the value to the yaml keyword ``null`` (which means no value), and this will passed to the pipeline without a value. The above specification will now pass ``--flavor=simple`` and ``--flag`` (no parameter) whenever rrbs.py is invoked -- for this project only. This is a way to control (and record!) project-level pipeline arg tuning. The only keyword here is `pipeline_args`; all other variables in this section are specific to particular pipelines, command-line arguments, and argument values.
For flag-like options (options without parameters), you should set the value to the yaml keyword ``null`` (which means no value). Looper will pass the key to the pipeline without a value. The above specification will now pass ``--flavor=simple`` and ``--flag`` (no parameter) whenever ``rrbs.py`` is invoked -- for this project only. This is a way to control (and record!) project-level pipeline arg tuning. The only keyword here is `pipeline_args`; all other variables in this section are specific to particular pipelines, command-line arguments, and argument values.


Project config section: compute
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