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New functionality: implement geneset enrichment test #11

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pascaltimshel opened this issue Jan 28, 2020 · 0 comments
Open

New functionality: implement geneset enrichment test #11

pascaltimshel opened this issue Jan 28, 2020 · 0 comments
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enhancement New feature or request

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@pascaltimshel
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Implement 'geneset enrichment test'
Statistical test: wilcox test on ESmu. Test if genes in gene list has higher ESmu than genes not in the lidt.
Input: gene list(s)
Output: enrichment statistics (stat, pval, conf int, ...) for each cell-type and gene list.
See BMIbrain manuscript for method description.
(See Jon's code for inspiration: https://github.com/perslab/19-BMI-brain-wgcna)

@pascaltimshel pascaltimshel added the enhancement New feature or request label Jan 28, 2020
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