ENH: Add support for different scipy.fft backends #1
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peterbell10
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Update values to CODATA 2018
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46edda35a Merge pull request scipy#25 from mckib2/upstream-2020-04-27 ff4d855a5 Update highs APIs for upstream changes 79e9ff321 Remove old uneeded pyx files c056ca6eb Merge remote-tracking branch 'upstream/master' into upstream-2020-04-27 c348884d2 Merge pull request scipy#331 from ERGO-Code/SwitchHIGHS_CONST_INF c6b988acc Replaced all == +/- HIGHS_CONST_INF with appropriate inequality ba37f3565 Solves all 99 LPs identically 1e2225324 Removed test of EMS file reader until scipy#320 is fixed 167bcdbdb Changed HIGHS_CONST_I_INF and HIGHS_CONST_INF, and modified createFreelist 5b129e1fe Merge pull request scipy#330 from ERGO-Code/ExternalDriver c7b4d47c4 Merge branch 'master' into ExternalDriver 897c3f112 Merge pull request scipy#329 from ERGO-Code/FixWindowDebugBuild 459c09ccf Removed call to issue295(highs) from TestSpecialLps.cpp 3ec3bf54d Merge pull request scipy#328 from ERGO-Code/dev-presolve 291fde056 old build removed 54e8e5eae Formatted 06497fb15 Made all changes suggested by MF 177f208a1 Made some small modifications in response to MF's comments on scipy#322 5dfb17e69 Made some small modifications in response to MF's comments on scipy#322 ae0b869d8 Stripped all the unnecessary stuff that shouldn't be in RunHighs.cpp and forced HiGHS to run quietly 2451fdbbf scaffold targets dev-presolve and scaffold work 60f912f0c moved scaffold files back to their repo@ 66fc4436c targets dev-presolve and scaffold building and running fac1af261 ctest fixed by making the new unit_test its own project 368b0c8b6 scaffold exe and scaffold unit tests exe building d44115db7 Merge branch 'master' into PhaseOne 19f0bdfb9 scaffold exe running 704f3e14d Dual infeasiblity - primal unboundedness - detected rather better in phase 1 59566a826 extra unit tests disabled from HiGHS root CMakeLists file@ f1356bd09 First CL: unit_test target cmake build error@ 46ed24f54 scaffold first CL 64b14b723 Formatted 79b008337 Still faffing with names in HSimplexDebug to keep it readable and consistent 8f94455b6 More debugging code - new for primals and more for duals 97d4ff8d7 Tracing flips in correctDual 237d311e0 Switch destination of results for computeSimplexPrimal/DualInfeasible OK! 86628e549 About to switch destination of results for computeSimplexPrimal/DualInfeasible e3ee537f6 About to get computeSimplexPrimal/DualInfeasible to write to simplex_info and then copy 6c6010a3b Written computeSimplexLpDualInfeasible b5c857b05 About to create computeLpPrimalInfeasible and computeLpDualInfeasible 2e7f7f15d About to introduce simplex_info_.run_quiet to rationalise the use of computePrimal/DualInfeasible just for logging 94ecd2c6f Removed simplex_info.allow_primal_flips_for_dual_feasibility since it's always true, and analyse_dual_infeasibilities_with_and_without_flips 22ad057a4 Added debugging of nonbasicMove in HSimplexDebug and removed some redundant code e32006edb Now storing updated objective value corrections so that the true value is still stored, but the value corrected WRT the previous error is tested d80387dae Debugged HSimplexDebug and increased tolerance on reporting small errors bf35f5d21 Added HSimplexDebug.cpp/h 614f13754 Updated dual and primal objective values appear to be correct c6899fda9 trying to get to the bottom of errors in updated dual objective, and where to shifts occur? 987fba1ad Replaced calls to checkUpdatedObjectiveValue with calls to debugUpdatedObjectiveValue and improved the numerics of updating the objective in HDualRow::updateDual db46bc3ea About to replace calls to checkUpdatedObjectiveValue with calls to debugUpdatedObjectiveValue 3916b6fe0 Formatted 1f0f66a10 About to use checkUpdatedObjectiveValue - cheap and non-trivial - as first instances of the highs_debug option 03926b1d4 Formatted c70371fa4 Set up near-unbounded LP in TestSpecialLps.cpp d6a3eacc0 formatted 6d48e7e9d Apparently fixed updated dual objective errors 7bd52aea8 Restored choice of simplex solvers according to primal/dual feasibility e6511bbfa Added getHighsInfinity to Highs class and C API d07d57252 Introduced simplex_info.allow_cost_perturbation so that cost shifts for feasibility at the start of phase 2 are possible 844767150 Now correctly resetting updated_dual_objective_value after recalculation of dual objective in cleanup c566fe4f2 Now looking at why hsol and HiGHS are different on adlittle_max: added comments at the end of phase 1 and added mpsMax in TestSpecialLps 67b891731 Add mpswriter; clean up setup.py 2c6e85cef Add all static library dependencies to cython wrappers 84a4b0791 conflic resolution 91be196aa Investigate primal/dual_status d26336f5e Added clearModel to the C API 576fae1d5 formatted 9bec48eb9 Added clearModel to Highs class and fixed bug I introduced into free format MPS reader 1e178d456 Added reporting of Primal/Dual status and HiGHS run time to RunHiGHS.cpp 0a5b1e6b6 Added reporting of primal/dual status to reportModelStatusSolutionBasis and confirmed that previous fix clears 324 c9f7b5c75 Merge pull request scipy#325 from ERGO-Code/clang-compile-check be0ad5698 Mods to eliminate compiiler warnings 14c6f068b Merge branch 'CAPI_highs_getHighsRunTime' into RunIPXsilently c52ded0a1 IPX uses options_.output and options_.message_level to set parameters.display and parameters.debug dc87b1c06 clang test for debug compile added 5b9acbde4 Added Highs_getHighsRunTime to the C API eac465e4f Fixed the objective value after IPX solves a maximization e8eb56f60 Fixed bug when integerColumn isn't assigned, and ignored warning from cleanBounds 0e2dec092 Made the basis valid in unconstrained LP solver! b7fc50c24 Merge branch 'master' into TestSimplex e85a91c1d Created TestSpecialLps.cpp ef4a23d19 Added ../check/instances/e226.mps sice it has an objective shift and is used for the dual-objective-upper-bound unit test 0d30258c8 Formatted e565e8e17 Got bailout to work, but realise time/iteration bailout needs to be separated from objective bailout 7a038a290 Now interpreting negation of RHS entry for N-row as objective offset 555df8e62 Cleared bug in hsol for unbounded LP 43004eea9 Formatted 504e948c3 Now confirming dual objective value upper bound bailout using exact dual objective function value bce567a93 Now reporting the dual phase 2 objective with correct sign when maximizing 4cfea860f Now applying the objective value shift correctly in HSimplex 7ce67bd88 Added resetHighsOptions to C API 55105ae10 Merge branch 'NewIterationCounts' into TestSimplex c55d6268a Fixed very embarassing bug following postsolve, and ensured that postsolve works OK when LP is reduced to empty 5c3609b7b Added solution/basis consistency testing in beforeReturnFromRun 7571a1dbf Removed iteration counts from HighsSolutionParams 3c413e365 Propagated use of HMO.iteration_counts_ 8713863ee Fixed HiGHSDEV=off bug b095372e8 Added HighsInterationCounts to HighsLp.h 58fba5d45 Formatted 99458df44 Merge branch 'TestSimplex' of https://github.com/ERGO-Code/HiGHS into TestSimplex 1731d18e7 Bypassed SIMPLEX_STRATEGY_DUAL_TASKS and SIMPLEX_STRATEGY_DUAL_MULTI in testSolvers when OpenMP not available 32cd5a77f openmp macro in HApp.h 4090d84ae Valgrind runs clear on unit tests now that updated objective vlaue testing is done when appropriate 5ff9108de Formatted ce57c2e73 Switched off the timeout test to see whether this why the build-windows / windows_debug test times out e07c3a843 Added resetHighsOptions() to the Highs class and restored all tests to TestLpSolvers 02b522cae Now using the same Highs instance to solve etamacro OK after solving adlittle 0be4a79bf Now using the same Highs instance to solve etamacro OK after solving adlittle 6917413dd Merge branch 'master' into TestSimplex a8e4984d6 Merge branch 'master' into TestSimplex b66a61c62 Removed printf(load_mpsLine: fgets_rt = %s, fgets_rt); - Line 414 of HMPSIO.cpp 68416f2ae Merged removeTicks into this branch ef60a30ef Formatted, and check/instances/simple_lp.lp deleted 21c6bf5e9 Corrected bug in lp file writer, and added equalButForNames to HighsLp.h to compare HighsLp from .lp and .mps/.ems files 649c73cd9 .lp writer error spotted 40cfe67f8 Fixed problem in HMPSIO.cpp preventing Max build d1dc9c1f8 Removed warning with CMAKE_BUILD_TYPE=debug 227dceabb Added garbage model file instances ab70378ec Using std::string consistently for filename and message. Deleted HToy* 585001b12 Formatted 249e8206f Eliminated lp.numInt_ 5cb4bed8c Eliminated lp.nnz_! e6cf8530b Formatted 0efd81b5d Eliminated io/LoadProblem.* efec51e95 About to remove loadProblem from TestFilereader.cpp 12f1391f0 RunHiGHS.cpp now uses highs.readModel - LP and MIP tested 5f61b80b0 About to delete LoadProblem.cpp 0482a9597 About to remove LoadProblem.cpp 7e1beb310 Added clearSolution(), clearBasis() and clearInfo() to Highs 3c941c295 Renamed TestSimplex.cpp TestLpSolvers.cpp 40e49a739 Merge branch 'master' into TestSimplex 87d67a447 Corrected bug HiGHSDEV=on bug 6da93ebdf TestSimplex now runs all simplex strategies and IPX: time to rename it TestLpSolver! 24ab779ae Formatted 80213ff20 Vanilla solve, timeout and iteration limit tests for DUAL and IPX done b07b4af3e Now delete HMO for reduced LP and fixed bug in HightTimer be7511c64 Changed runLpSolver argument to index of HMO, not the HMO ae6bb5759 Moved guts of runLpSolver to solveLp in HighsSolve: About to change runLpSolver argument to index of HMO, not the HMO e843d557e Now using better timeout test, but exposed internal simplex iteration count as being relative not absolute fef353ee6 Merge branch 'master' into TestSimplex c2023e628 Added setBasis() to set up logical basis and Highs_setBasis and Highs_setLogicalBasis for the C API 21ab880c1 Created TestSimplex unit test cc203801b Merge branch 'master' of github.com:ERGO-Code/HiGHS 4f403adc3 merge updates ergo cfb4743be Merge pull request #1 from galabovaa/build-workflow d9d9f14a5 Update build.yml 08605edd4 added algorithm header 5476283ba build on github git-subtree-dir: scipy/optimize/_highs git-subtree-split: 46edda35a639f142caec004dfe7a5584addfea83
peterbell10
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peterbell10
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* 🏗️ [ENH] - Update Dockerfile - split into Meson and dev * ENH - Split Dockerbuilds * DEV: Add pip to avoid warning * ENH: Add docs to Dockerfile * DEV: Improve Docker build * DEV: Quick fix for env setup * DEV: Testing - will revert * DEV: Only use docutils * DEV: Revert test * DEV: Docutils install - will remove later
WarrenWeckesser
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Jul 22, 2022
MAINT: stats._contains_nan: only detect numeric np.nan, not string 'nan'
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