Merge pull request #34 from phac-nml/Update_SE_Fix_Readme

Updating SE 0.8.0, Citation + Logo Fix, Updating Tests

README.rst

@@ -3,7 +3,7 @@
 
 |pypi| |nbsp| |license| |citest| |conda| |nbsp|
 
-.. |logo| image:: https://s2.postimg.org/5m5hiakax/Selection_044.png
+.. |logo| image:: https://i.imgur.com/yYOkFlH.png
     :target: https://github.com/phac-nml/bio_hansel
 .. |pypi| image:: https://badge.fury.io/py/bio-hansel.svg
     :target: https://pypi.python.org/pypi/bio_hansel/
@@ -28,7 +28,7 @@ If you find this tool useful, please cite as:
 .. epigraph::
 
     A robust genotyping scheme for *Salmonella enterica* serovar Heidelberg clones circulating in North America.
-    Geneviève Labbé, James Robertson, Peter Kruczkiewicz, Marisa Rankin, Matthew Gopez, Chad R. Laing, Philip Mabon, Kim Ziebell, Aleisha R. Reimer, Lorelee Tschetter, Gary Van Domselaar, Sadjia Bekal, Kimberley A. MacDonald, Linda Hoang, Linda Chui, Danielle Daignault, Durda Slavic, Frank Pollari, E. Jane Parmley, Philip Mabon, Elissa Giang, Lok Kan Lee, Jonathan Moffat, Marisa Rankin, Joanne MacKinnon, Roger Johnson, John H.E. Nash.
+    Geneviève Labbé, James Robertson, Peter Kruczkiewicz, Marisa Rankin, Matthew Gopez, Chad R. Laing, Philip Mabon, Kim Ziebell, Aleisha R. Reimer, Lorelee Tschetter, Gary Van Domselaar, Sadjia Bekal, Kimberley A. MacDonald, Linda Hoang, Linda Chui, Danielle Daignault, Durda Slavic, Frank Pollari, E. Jane Parmley, Elissa Giang, Lok Kan Lee, Jonathan Moffat, Joanne MacKinnon, Roger Johnson, John H.E. Nash.
     [Manuscript in preparation]
 
 
@@ -91,7 +91,7 @@ If you run ``hansel -h``, you should see the following usage statement:
 
           Subtype Salmonella enterica genomes using 33bp k-mer typing schemes.
           Includes schemes for Heidelberg and Enteritidis subtyping.
-          Developed by Genevi�ve Labb�, James Robertson, Peter Kruczkiewicz, Chad R. Laing, Kim Ziebell, Marisa Rankin, Aleisha R. Reimer, Lorelee Tschetter, Gary Van Domselaar, Eduardo N. Taboada, Sadjia Bekal, Kimberley A. MacDonald, Linda Hoang, Linda Chui, Danielle Daignault, Durda Slavic, Frank Pollari, E. Jane Parmley, Philip Mabon, Elissa Giang, Lok Kan Lee, Jonathan Moffat, Joanne MacKinnon, Benjamin M. Hetman, Roger Johnson, John H.E. Nash.
+          Developed by Geneviève Labbé, James Robertson, Peter Kruczkiewicz, Chad R. Laing, Kim Ziebell, Marisa Rankin, Aleisha R. Reimer, Lorelee Tschetter, Gary Van Domselaar, Eduardo N. Taboada, Sadjia Bekal, Kimberley A. MacDonald, Linda Hoang, Linda Chui, Danielle Daignault, Durda Slavic, Frank Pollari, E. Jane Parmley, Philip Mabon, Elissa Giang, Lok Kan Lee, Jonathan Moffat, Joanne MacKinnon, Benjamin M. Hetman, Roger Johnson, John H.E. Nash.
 
           positional arguments:
             F                     Input genome FASTA/FASTQ files