bio_hansel v0.2.0
Added:
- testing for fastq files, changing input of fasta file to match README documentation
- Travis CI testing; empty
__init__.py
file that is required to runpytest
for CI
Updated:
- #11: schema for Enteritidis to 0.7.0.
- tests
- readme; install instructions
Fixes:
- #4: added version to
SCHEME_FASTAS
inutils.py
and added toSubtype
andpd.DataFrame
- #3: check
sys.argv
length onmain.py
commandline execution and print help on no args - #6: Changing all
*_total
fields to*_expected
- #7: Filtering out unwanted columns in FASTA output
- #10:
>
to>=
infind_inconsistent_subtypes
inutils.py
; Added tests forenteritidis
subtyping scheme