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69 when skipping species classification and running staramr pipeline fails #74

Merged
merged 15 commits into from
May 13, 2024
Merged

69 when skipping species classification and running staramr pipeline fails #74

merged 15 commits into from
May 13, 2024

Commits on May 13, 2024

  1. updated default pointer finder db for StarAMR

    @mattheww95
    mattheww95 committed May 13, 2024
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  2. updated pipeline test case for ecoli, to run starAMR and skip species… 

    … calssification
    @mattheww95
    mattheww95 committed May 13, 2024
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  3. removed duplicated parameters for locidex

    @mattheww95
    mattheww95 committed May 13, 2024
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  4. updated changelog

    @mattheww95
    mattheww95 committed May 13, 2024
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  5. altered tophit channel to contain a default value

    @mattheww95
    mattheww95 committed May 13, 2024
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  6. updated tests and removed STARAMR DB dump process

    @mattheww95
    mattheww95 committed May 13, 2024
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  7. cleaned up starAMR tests

    @mattheww95
    mattheww95 committed May 13, 2024
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  8. Updated staramr to version 0.10.0

    @apetkau
    apetkau committed May 13, 2024
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  9. Added CGE Predicted Phenotype

    @apetkau
    apetkau committed May 13, 2024
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  10. merged when skipping species classification

    @apetkau
    apetkau committed May 13, 2024
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  11. Fixed up one test

    @apetkau
    apetkau committed May 13, 2024
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  12. Merge pull request #75 from phac-nml/update/staramr 

    Update/staramr
    @mattheww95
    mattheww95 committed May 13, 2024
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  13. resolved pr comments

    @mattheww95
    mattheww95 committed May 13, 2024
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  14. removed starAMR db version dump

    @mattheww95
    mattheww95 committed May 13, 2024
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  15. fixed linting issues

    @mattheww95
    mattheww95 committed May 13, 2024
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