• fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

    HTML 115 70 BSD-3-Clause 31 issues need help Updated Aug 15, 2018
  • Automated Quality Control and visual reports for Quality Assesment of structural (T1w, T2w) and functional MRI of the brain

    Python 63 39 BSD-3-Clause 1 issue needs help Updated Aug 15, 2018
  • Python 1 10 Apache-2.0 Updated Aug 14, 2018
  • Fit Linear Models to BIDS Datasets

    Python 16 4 Apache-2.0 2 issues need help Updated Aug 13, 2018
  • A repository for notebooks associated with FMRIPREP

    Jupyter Notebook 1 1 MIT Updated Jul 23, 2018
  • Schemas for the MRIQC WebAPI

    Python Apache-2.0 Updated Jul 19, 2018
  • Common workflows for MRI (anatomical, functional, diffusion, etc)

    Python 16 14 BSD-3-Clause Updated Jul 18, 2018
  • Automatic Facial Feature Removal (ARFF) to de-identify MR scans via Convolutional Neural Networks

    1 Apache-2.0 Updated Jul 16, 2018
  • defacing utility for MRI images

    Python 21 13 MIT Updated Apr 27, 2018
  • SciTran RESTful API

    Python 1 17 MIT Updated Apr 26, 2018
  • Python 2 2 MIT Updated Apr 25, 2018
  • Analysis of ds_000030 (CNP) task data.

    Jupyter Notebook 1 1 MIT Updated Apr 12, 2018
  • Reimplementation of OpenfMRI.org in Django

    Python 3 5 BSD-3-Clause Updated Feb 5, 2018
  • Deployment scripts for CRN

    JavaScript 1 5 Updated Nov 29, 2017
  • Code and data for "Scanning the Horizon..." review in Nature Reviews Neuroscience

    Jupyter Notebook 3 2 MIT Updated Nov 14, 2017
  • A repository to store our module files for use in both TACC and Sherlock

    Lua Apache-2.0 Updated Oct 9, 2017
  • A reinterpretation of the TACC launcher in Python, based off dask

    Python 1 MIT Updated Sep 12, 2017
  • JavaScript 3 MIT Updated Aug 15, 2017
  • JavaScript 3 MIT Updated Aug 15, 2017
  • A simple utility for executing multiple sequential or multi-threaded applications in a single multi-node batch job

    Shell 18 MIT Updated Feb 21, 2017
  • A tool for building and registering apps into the CRN/Agave framework

    Python 1 Apache-2.0 Updated Feb 8, 2017
  • A Docker base image for CRN's apps

    1 BSD-3-Clause Updated Jan 13, 2017
  • Repository with code for power/effect size figure in NRN.

    Jupyter Notebook MIT Updated Jul 11, 2016
  • OpenfMRI Data Curation Tools

    Jupyter Notebook MIT Updated May 11, 2016
  • updates to parametric launcher on TACC/lonestar5

    Python 1 1 MIT Updated Apr 16, 2016
  • Python 3 2 Updated Sep 11, 2015
  • Simulation code from Davis et al., 2014, Neuroimage

    R 1 Updated Jun 2, 2015
  • modules for lab-specific packages on stampede

    Lua MIT Updated May 30, 2015
  • Tutorials for learning imaging analysis (and other things), typically in ipython Notebook or R Markdown

    Python 7 1 Updated May 23, 2015
  • Repo for general-purpose code in the poldrack lab

    Python 1 2 Apache-2.0 Updated Nov 27, 2014