‘#4415

[ValWood]

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Changes added to the edit file this PR

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Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abnormal mitochondrial fusion http://purl.obolibrary.org/obo/FYPO_0008089

Added

• abnormal mitochondrial fusion label "abnormal mitochondrial fusion"@en

• abnormal mitochondrial fusion creation_dat "2023-08-31T16:44:05Z"^^dateTime

• abnormal mitochondrial fusion definition "A cellular process phenotype in which mitochondrion fusion is abnormal."

  • database_cross_reference "PMID:37590302"

• abnormal mitochondrial fusion created_by "vw"

• Class: abnormal mitochondrial fusion

• abnormal mitochondrial fusion EquivalentTo has_part some
  (quality and (inheres in part of some mitochondrial fusion) and (qualifier some abnormal))

• abnormal mitochondrial fusion SubClassOf abnormal cellular process

altered tRNA level during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008101

Added

• altered tRNA level during vegetative growth definition "A cell phenotype in which the amount of tRNA measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle."

  • comment "PMID:36794724"

• altered tRNA level during vegetative growth created_by "vw"

• altered tRNA level during vegetative growth label "altered tRNA level during vegetative growth"@en

• altered tRNA level during vegetative growth creation_dat "2023-08-31T16:56:39Z"^^dateTime

• altered tRNA level during vegetative growth comment "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term."

• Class: altered tRNA level during vegetative growth

• altered tRNA level during vegetative growth SubClassOf altered RNA level during vegetative growth

increased mature tRNA level during vegetative growth http://purl.obolibrary.org/obo/FYPO_0002564

Added

• increased mature tRNA level during vegetative growth SubClassOf altered tRNA level during vegetative growth

increased polyadenylated 25S rRNA level http://purl.obolibrary.org/obo/FYPO_0004678

Removed

• increased polyadenylated 25S rRNA level SubClassOf increased RNA level during vegetative growth

• increased polyadenylated 25S rRNA level SubClassOf altered rRNA or precursor level

Added

• increased polyadenylated 25S rRNA level SubClassOf increased polyadenylated rRNA level

increased polyadenylated 5S rRNA level during cellular response to phosphate starvation http://purl.obolibrary.org/obo/FYPO_0008100

Added

• increased polyadenylated 5S rRNA level during cellular response to phosphate starvation creation_dat "2023-08-31T16:52:27Z"^^dateTime

• increased polyadenylated 5S rRNA level during cellular response to phosphate starvation comment "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term."

• increased polyadenylated 5S rRNA level during cellular response to phosphate starvation created_by "vw"

• increased polyadenylated 5S rRNA level during cellular response to phosphate starvation definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature, polyadenylated 5S rRNA measured in a cell is higher than normal during phosphate starvation."

  • database_cross_reference "PMID:36794724"

• increased polyadenylated 5S rRNA level during cellular response to phosphate starvation label "increased polyadenylated 5S rRNA level during cellular response to phosphate starvation"@en

• Class: increased polyadenylated 5S rRNA level during cellular response to phosphate starvation

• increased polyadenylated 5S rRNA level during cellular response to phosphate starvation SubClassOf increased polyadenylated rRNA level

increased polyadenylated rRNA level http://purl.obolibrary.org/obo/FYPO_0008091

Added

• increased polyadenylated rRNA level definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature, polyadenylated rRNA measured in a cell is higher than normal."

  • database_cross_reference "PMID:36794724"

• increased polyadenylated rRNA level comment "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term."

• increased polyadenylated rRNA level created_by "vw"

• increased polyadenylated rRNA level label "increased polyadenylated rRNA level"@en

• increased polyadenylated rRNA level creation_dat "2023-08-31T16:49:14Z"^^dateTime

• Class: increased polyadenylated rRNA level

• increased polyadenylated rRNA level SubClassOf increased RNA level during vegetative growth

• increased polyadenylated rRNA level SubClassOf altered rRNA or precursor level

increased pre-tRNA level during vegetative growth http://purl.obolibrary.org/obo/FYPO_0006749

Added

• increased pre-tRNA level during vegetative growth SubClassOf altered tRNA level during vegetative growth

increased tRNA level during cellular response to phosphate starvation http://purl.obolibrary.org/obo/FYPO_0008102

Added

• increased tRNA level during cellular response to phosphate starvation label "increased tRNA level during cellular response to phosphate starvation"@en

• increased tRNA level during cellular response to phosphate starvation definition "A cell phenotype in which the amount of tRNA measured in a cell is increased from normal when the cell is in the vegetative growth phase of the life cycle during phosphate starvation."

  • database_cross_reference "PMID:36794724"

• increased tRNA level during cellular response to phosphate starvation comment "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term."

• increased tRNA level during cellular response to phosphate starvation created_by "vw"

• increased tRNA level during cellular response to phosphate starvation creation_dat "2023-08-31T17:04:56Z"^^dateTime

• Class: increased tRNA level during cellular response to phosphate starvation

• increased tRNA level during cellular response to phosphate starvation SubClassOf altered tRNA level during vegetative growth

normal mitochondrial inheritance http://purl.obolibrary.org/obo/FYPO_0008108

Added

• normal mitochondrial inheritance label "normal mitochondrial inheritance"@en

• normal mitochondrial inheritance created_by "vw"

• normal mitochondrial inheritance creation_dat "2023-08-31T17:12:24Z"^^dateTime

• normal mitochondrial inheritance definition "A phenotype in which mitochondrial is normal (i.e. indistinguishable from wild type)."

  • comment "PMID:15710398"

• Class: normal mitochondrial inheritance

• normal mitochondrial inheritance EquivalentTo has_part some
  (quality and (inheres_in some mitochondrion inheritance) and (qualifier some normal))

• normal mitochondrial inheritance SubClassOf normal cellular process

Changes to ontology after reasoner runs

Click to expand

Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf	
INFO	missing_superclass	normal inositol heptakisphosphate 5-kinase activity	rdfs:subClassOf