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‘#4415 #4417

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Aug 31, 2023
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‘#4415 #4417

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68 changes: 65 additions & 3 deletions src/ontology/fypo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -8565,7 +8565,9 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008085>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008086>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008087>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008088>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008089>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008090>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008091>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008092>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008093>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008094>))
Expand All @@ -8574,11 +8576,15 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008096>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008097>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008098>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008099>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008100>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008101>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008102>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008103>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008104>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008105>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008106>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008107>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008108>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008109>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008110>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008111>))
Expand Down Expand Up @@ -48766,6 +48772,7 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0002564> "
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0002564> "increased mature tRNA level during vegetative growth")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0002564> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001162> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000032> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CL_0000334>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002503> <http://purl.obolibrary.org/obo/SO_0000253>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0002564> <http://purl.obolibrary.org/obo/FYPO_0000825>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0002564> <http://purl.obolibrary.org/obo/FYPO_0008101>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0002565> (abolished histone methylation during vegetative growth)

Expand Down Expand Up @@ -67339,9 +67346,9 @@ SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0003806> <http://purl.obolibrary
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19373772") Annotation(rdfs:comment "PMID:37540145") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0003807> "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which mitochondria form branched structures.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0003807> "midori")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0003807> "2014-09-12T14:36:24Z")
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0003807> "branched mitochondria")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0003807> "branched mitochondria during vegetative growth")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0003807> "branched mitochondrion")
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0003807> "branched mitochondria")
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0003807> "fission_yeast_phenotype")
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0003807> "FYPO:0003807")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0003807> "net-like mitochondrial morphology")
Expand Down Expand Up @@ -80347,8 +80354,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRel
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0004678> "FYPO:0004678")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0004678> "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0004678> "increased polyadenylated 25S rRNA level")
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004678> <http://purl.obolibrary.org/obo/FYPO_0000825>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004678> <http://purl.obolibrary.org/obo/FYPO_0005996>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004678> <http://purl.obolibrary.org/obo/FYPO_0008091>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0004679> (polyadenylated 25S rRNA absent from cell)

Expand Down Expand Up @@ -111666,6 +111672,7 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0006749> "
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0006749> "increased pre-tRNA level during vegetative growth")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0006749> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001162> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000032> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CL_0000334>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002503> <http://purl.obolibrary.org/obo/SO_0000210>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0006749> <http://purl.obolibrary.org/obo/FYPO_0000825>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0006749> <http://purl.obolibrary.org/obo/FYPO_0008101>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0006750> (normal pre-tRNA level during nitrogen starvation)

Expand Down Expand Up @@ -130616,6 +130623,15 @@ AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYP
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008088> "abolished chromosome oscillation at meiotic metaphase I"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008088> <http://purl.obolibrary.org/obo/FYPO_0008098>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008089> (abnormal mitochondrial fusion)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37590302") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008089> "A cellular process phenotype in which mitochondrion fusion is abnormal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008089> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008089> "2023-08-31T16:44:05Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008089> "abnormal mitochondrial fusion"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008089> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0008053>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008089> <http://purl.obolibrary.org/obo/FYPO_0000628>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008090> (normal onset of mitotic anaphase B)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008090> "A cellular process phenotype in which mitotic anaphase begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events.")
Expand All @@ -130625,6 +130641,16 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008090> "no
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008090> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0002325> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0000092>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000461>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008090> <http://purl.obolibrary.org/obo/FYPO_0000627>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008091> (increased polyadenylated rRNA level)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36794724") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008091> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature, polyadenylated rRNA measured in a cell is higher than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008091> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008091> "2023-08-31T16:49:14Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008091> "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008091> "increased polyadenylated rRNA level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008091> <http://purl.obolibrary.org/obo/FYPO_0000825>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008091> <http://purl.obolibrary.org/obo/FYPO_0005996>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008092> (growth auxotrophic for para-hydroxy benzoic acid)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37156397") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008092> "Auxotrophy in which a cell is unable to synthesize para-hydroxy benzoic acid and therefore requires para-hydroxy benzoic acid in the medium for vegetative cell growth.")
Expand Down Expand Up @@ -130687,6 +130713,33 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008099> "abolished homologous chromosome movement at anaphase A"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008099> <http://purl.obolibrary.org/obo/FYPO_0004159>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008100> (increased polyadenylated 5S rRNA level during cellular response to phosphate starvation)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36794724") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008100> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature, polyadenylated 5S rRNA measured in a cell is higher than normal during phosphate starvation.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008100> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008100> "2023-08-31T16:52:27Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008100> "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008100> "increased polyadenylated 5S rRNA level during cellular response to phosphate starvation"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008100> <http://purl.obolibrary.org/obo/FYPO_0008091>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008101> (altered tRNA level during vegetative growth)

AnnotationAssertion(Annotation(rdfs:comment "PMID:36794724") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008101> "A cell phenotype in which the amount of tRNA measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008101> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008101> "2023-08-31T16:56:39Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008101> "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008101> "altered tRNA level during vegetative growth"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008101> <http://purl.obolibrary.org/obo/FYPO_0001326>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008102> (increased tRNA level during cellular response to phosphate starvation)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36794724") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008102> "A cell phenotype in which the amount of tRNA measured in a cell is increased from normal when the cell is in the vegetative growth phase of the life cycle during phosphate starvation.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008102> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008102> "2023-08-31T17:04:56Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008102> "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008102> "increased tRNA level during cellular response to phosphate starvation"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008102> <http://purl.obolibrary.org/obo/FYPO_0008101>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008103> (normal protein localization to perinuclear endoplasmic reticulum)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36799444") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008103> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the preinuclear endoplasmic reticulum is normal (i.e. indistinguishable from wild type).")
Expand Down Expand Up @@ -130727,6 +130780,15 @@ AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008107> "decreased protein localization to nucleus during stationary phase"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008107> <http://purl.obolibrary.org/obo/FYPO_0004455>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008108> (normal mitochondrial inheritance)

AnnotationAssertion(Annotation(rdfs:comment "PMID:15710398") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008108> "A phenotype in which mitochondrial is normal (i.e. indistinguishable from wild type).")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008108> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008108> "2023-08-31T17:12:24Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008108> "normal mitochondrial inheritance"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008108> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0000001>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000461>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008108> <http://purl.obolibrary.org/obo/FYPO_0000627>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008109> (abolished U6 2'-O-snRNA methylation at residue A64)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37403782") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008109> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which posttranscriptional addition of a methyl group to the 2'-oxygen atom of the adenine residue at position 64 in an U6 snRNA molecule is abolished.")
Expand Down
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