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customizable information retrieval for search results #20

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mah11 opened this issue Aug 1, 2016 · 4 comments
Closed

customizable information retrieval for search results #20

mah11 opened this issue Aug 1, 2016 · 4 comments

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@mah11
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mah11 commented Aug 1, 2016

For genes in a list of query results, offer a set of options to retrieve for every gene in the list:

  • Systematic ID
  • Standard Name
  • Synonyms
  • Product
  • Chromosome
  • Location (coordinates)
  • Feature length (nucleotides)
  • Human ortholog(s)
    -S. cerevisiae ortholog(s)

Back in the day, GeneDB also included Organism. We can omit this for now, since it's all S. pombe, but the day may come when we have the other Schizo species. We're less likely to need "Systematic ID with prefix", "Previous Systematic ID", or "EC number", but if we do we can open a new ticket.

Offer viewable HTML and tab-delimited text download. I guess downloadable JSON would also be useful.

@mah11
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mah11 commented Aug 1, 2016

related to #21; this one is about basic information, whereas the other is for curated data that has its own supporting metadata

@ValWood
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ValWood commented Jul 6, 2017

Before the long implementation, we would like a way just to extract a basic gene/product list

@ValWood
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ValWood commented Jul 12, 2017

As much as users will love this, it is enhancement. Will become priority soon after going live.

@mah11
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mah11 commented Oct 24, 2017

The current pop-up has most of these -

Systematic ID
Name
Product description
UniProt ID
Synonyms
Feature type
Start position
End position
Strand

... so let's close this and open a new ticket if we want anything added to it (only length, chromosome, orthologs missing from the original list).

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