embedding community archive submission checklists from PR templates

archive_submission_guide.md

@@ -42,31 +42,7 @@ This is mandatory. Please also run [`trident validate`](trident?id=validate-comm
 
 The community archive has some additional requirements for your package beyond what you would need to simply use the package locally for your own analysis. So the following submission **checklist** includes some of these less obvious qualities you should consider before submitting the package online, on top of what is technically necessary:
 
-- [ ] The package does not exist already in the community archive, also not with a different name.
-- [ ] The package title in the `POSEIDON.yml` conforms to the general title structure suggested here: `<Year>_<Last name of first author>_<Region, time period or special feature of the paper>`, e.g. `2021_Zegarac_SoutheasternEurope`, `2021_SeguinOrlando_BellBeaker` or `2021_Kivisild_MedievalEstonia`.
-- [ ] The package is stored in a directory that is named like the package title.
-
-
-- [ ] The package is complete and features the following elements:
-  - [ ] Genotype data in binary PLINK format (not EIGENSTRAT format).
-  - [ ] A `POSEIDON.yml` file with not just the file-referencing fields, but also the following meta-information fields present and filled: `poseidonVersion`, `title`, `description`, `contributor`, `packageVersion`, `lastModified` (see [here](https://github.com/poseidon-framework/poseidon-schema/blob/master/POSEIDON_yml_fields.tsv) for their definition)
-  - [ ] A reasonably filled `.janno` file (for a list of available fields look [here](https://github.com/poseidon-framework/poseidon-schema/blob/master/janno_columns.tsv) and [here](https://www.poseidon-adna.org/#/janno_details) for more detailed documentation about them).
-  - [ ] A `.bib` file with the necessary literature references for each sample in the `.janno` file.
-- [ ] Every file in the submission is correctly referenced in the `POSEIDON.yml` file and there are no additional, supplementary files in the submission that are not documented there.
-- [ ] Genotype data, `.janno` and `.bib` file are all named after the package title and only differ in the file extension.
-- [ ] All text files are UTF-8 encoded and have Unix/Unix-like line endings (`LF`, not `CR+LF` or `CR`).
-- [ ] The package version in the `POSEIDON.yml` file is `1.0.0`.
-- [ ] The `poseidonVersion` of the package in the `POSEIDON.yml` file is set to the latest version of the Poseidon schema.
-- [ ] The `POSEIDON.yml` file contains the corresponding checksums for the fields `genoFile`, `snpFile`, `indFile`, `jannoFile` and `bibFile`.
-- [ ] There is either no `CHANGELOG` file or one with a single entry for version `1.0.0`.
-
-
-- [ ] The `Publication` column in the `.janno` file is filled and the respective `.bib` file has complete entries for the listed mentioned keys.
-- [ ] The `.janno` file does not include any empty columns or columns only filled with `n/a`.
-- [ ] The order of columns in the `.janno` file adheres to the standard order as defined in the Poseidon schema [here](https://github.com/poseidon-framework/poseidon-schema/blob/master/janno_columns.tsv).
-
-
-- [ ] The package passes a validation with `trident validate --fullGeno`.
+[](https://raw.githubusercontent.com/poseidon-framework/community-archive/master/.github/PULL_REQUEST_TEMPLATE/add_package_template.md ':include')
 
 ### Submitting the package
 
@@ -156,16 +132,4 @@ Please do not wait too long (max. 2 weeks) between creation of the fork and subm
 
 Please note the following submission **checklist** for modified packages:
 
-- [ ] The changes maintain the structural integrity of the affected packages.
-- [ ] The checksums of the modified files in the respective `POSEIDON.yml` files were adjusted properly.
-- [ ] Every file in the submission is correctly referenced in the relevant `POSEIDON.yml` files and there are no additional, supplementary files in the submission that are not documented there.
-- [ ] All text files are still UTF-8 encoded and have Unix/Unix-like line endings (`LF`, not `CR+LF` or `CR`).
-
-
-- [ ] The `packageVersion` numbers of the affected packages were increased in their `POSEIDON.yml` files.
-- [ ] The changes were documented in the respective `CHANGELOG` files. If no `CHANGELOG` files existed previously it was added here.
-- [ ] The `lastModified` fields of the affected `POSEIDON.yml` files were updated.
-- [ ] The `contributor` fields were updated with `name`, `email` and `orcid` of the relevant, new contributors.
-
-
-- [ ] All affected packages pass a validation with `trident validate --fullGeno`.
+[](https://raw.githubusercontent.com/poseidon-framework/community-archive/master/.github/PULL_REQUEST_TEMPLATE/modify_package_template.md ':include')